Query= MSMg01no114_f16.b1 MSMg01no114_f16.b1 CHROMAT_FILE:
MSMg01no114_f16.b1 PHD_FILE: MSMg01no114_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:01 2005
(526 letters)
>mm_chr9_60588488_60589409
Length = 922
Score = 920 bits (476), Expect = 0.0
Identities = 509/522 (97%), Gaps = 4/522 (0%)
Strand = Plus / Plus
Query: 5 gaattccagtgtaccccagctactttaaagaccttcatctttatacataaatccaggcgg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtgtaccccagctactttaaagaccttcatctttatacataaatccaggcgg 264
Query: 65 actggacctgccctctacagaactgccccgtgggatgctatgctgggatcctgaacctga 124
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 265 actggacctgccctctacagaactgccccgtggggtgctatgctggggtcctgaacctga 324
Query: 125 gctcagtagctctgagttctagtcttggactctttcaggaaagaaccctggagaagtgat 184
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 325 gctcagtagctctgagttctagtcttggactattccaggaaagaaccctggagaagtgat 384
Query: 185 ttctgtattcagttcatgattccccatgcagtcagtggagaacaatcagataggtgctcc 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttctgtattcagttcatgtttccccatgcagtcagtggagaacaatcagataggtgctcc 444
Query: 245 tgagatgacctaagtccctgcaagtgctttgtaggcattattacatgtctcgccgtccca 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 tgagatgacctaagtccctgcaagtgctttgtaggcattattacatgtctcgccttccca 504
Query: 305 tcatctccaaacacagcctacccattctcccaagggtttggaccttggttcgtggttgac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcatctccaaacacagcctacccattctcccaagggtttggaccttggttcgtggttgac 564
Query: 365 accacttgcagagcctatccctctgttggtctggctcacaccattctggagtgaggttcc 424
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 accacttgcagagcctattcctctgttggtctggctcacaccattctggagtgaggttcc 624
Query: 425 ctgagtgactgtagtgggtgggcagcattaagactctctcccatcatgctgagacagggg 484
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 625 ctgagtgactttagtgggtgggcagcattaagactc----ccatcatgctgagacagggg 680
Query: 485 gctttagggacatgcatttcttcccctccttcaggacctagt 526
|||||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 gctttagggacatgcacttcttcccctccttcaggacctagt 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 922
Length adjustment: 10
Effective length of query: 516
Effective length of database: 912
Effective search space: 470592
Effective search space used: 470592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_f16.g1 MSMg01no114_f16.g1 CHROMAT_FILE:
MSMg01no114_f16.g1 PHD_FILE: MSMg01no114_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:01 2005
(589 letters)
>mm_chr9_60730636_60731622
Length = 987
Score = 1027 bits (531), Expect = 0.0
Identities = 576/593 (97%), Gaps = 6/593 (1%)
Strand = Plus / Minus
Query: 1 cctgattcaagctggagaaatggctccatgctctttcagaggtactgagttcaattccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 cctgattcaagctggagaaatggctccatgctctttcagaggtactgagttcaattccca 903
Query: 61 gcaaccacatggtgactcacaa-acatctgtaacagaatctgataccctccttctggtgt 119
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 902 gcaaccacatggtgactcacaacacatctgtaacaggatctgataccctccttctggtgt 843
Query: 120 ctgaagacagtgacagtgtacagatataaataaaataatt---aaaaaaaaagaattcag 176
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 842 ctgaagacagtgacagtgtacagatataaataaaataattttaaaaaaaaaagaattcag 783
Query: 177 tgactctcccagagaacttgtagatccttaggtgacaactggttacttcaggtctcacag 236
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 782 tgactctcccagagaacttgtagatccgtaggtgacaactagttacttcaggtctcacag 723
Query: 237 tctttctgaacataaaacagaaatatgagcatccatgacctatgttctaccgacttctaa 296
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 722 tctttctgaacataaaacagaaatatgagcatccatgacctatgttctactgacttctaa 663
Query: 297 ctaaaatgccttcatcaccaatgctttaaatgtgatctcagcctgacatgtccagaggtg 356
||||||||||||||||||||||||||||||||||||||||||||| ||| | | | |||
Sbjct: 662 ctaaaatgccttcatcaccaatgctttaaatgtgatctcagcctggcatat--ataagtg 605
Query: 357 agtggatgacaacaggattggcctaagagggtctcagcatcttcttccatatctgggtcc 416
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 604 agtggatgacaacaggattggcctaagaggctctcagcaccttcttccatatctgggtcc 545
Query: 417 ctgccagtttttattccaagttctccaaagataagaaatggaaaacttaactttcaagtc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ctgccagtttttattccaagttctccaaagataagaaatggaaaacttaactttcaagtc 485
Query: 477 ttctttatataaggatactcaaaagaattctaaagaaatagtttttgacaggcaaagaca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 484 ttctttatataaggatactcaaaagaattctaaagaaatagtttttgacaggcgaagaca 425
Query: 537 aaatgcaggggatggacacatatactgatcttgcaagggactccagctgttcc 589
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aaatgcaggggatggacacatatactgatcttgcaagggactccagctgttcc 372
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 987
Length adjustment: 10
Effective length of query: 579
Effective length of database: 977
Effective search space: 565683
Effective search space used: 565683
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
