Query= MSMg01no115_d01.b1 MSMg01no115_d01.b1 CHROMAT_FILE:
MSMg01no115_d01.b1 PHD_FILE: MSMg01no115_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:04 2005
(518 letters)
>mm_chr9_116522164_116523080
Length = 917
Score = 938 bits (485), Expect = 0.0
Identities = 509/517 (98%), Gaps = 1/517 (0%)
Strand = Plus / Plus
Query: 2 gaattcacaggaagttttccaatggcctttagtcagctgtggctctttgcgagttcataa 61
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 202 gaattcacaggaagttttccaatggcctttagtcagctgcggctctttgcgagttcataa 261
Query: 62 taggtccgattaaacaattttcaaaggttaatcacactcatcagcccaggcctcttggtg 121
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 taggtccgattagacaattttcaaaggttaatcacactcatcagcccaggcctcttggtg 321
Query: 122 agtgagtgctacaaaacatggacaagtatttcctgtgcacgtacaaaccgccctttccgg 181
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 322 agtgagtgctacaaaacatggacaagtatttcctgtgcacgtacaaactgccctttccgg 381
Query: 182 agatgtgccaatgaccactggtcccctgtcaaagacaaggatggcctgcctcacccctct 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agatgtgccaatgaccactggtcccctgtcaaagacaaggatggcctgcctcacccctct 441
Query: 242 ggtctgctggataaggtcgatgaaggaaggaacaggcaggaaatgcctttcatcccctgt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggtctgctggataaggtcgatgaaggaaggaacaggcaggaaatgcctttcatcccctgt 501
Query: 302 tcaggcccaatgcttccccagctgtcatgtccttaagccttcccaagttgcatccaagac 361
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tcaggcccagtgcttccccagctgtcatgtccttaagccttcccaagttgcatccaagat 561
Query: 362 gtgctctttcggcatccctgggacactgatggacacccttcctccatcccctaaagaatg 421
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 562 gtgctctttcggcatccctgggacactgatggacacccttcctccttcccctaaagaatg 621
Query: 422 aacctacatgcttggcagcagttggtccctagtccttggtttgtagatttccacctcccc 481
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 622 aacctacatgcttggcagcagttggtccctagtccttggtttgtagatttccac-tcccc 680
Query: 482 caccaaatatctgaaatatttgaatgtttttcccatg 518
||||||||||||||||||| |||||||||||||||||
Sbjct: 681 caccaaatatctgaaatatgtgaatgtttttcccatg 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 917
Length adjustment: 10
Effective length of query: 508
Effective length of database: 907
Effective search space: 460756
Effective search space used: 460756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_d01.g1 MSMg01no115_d01.g1 CHROMAT_FILE:
MSMg01no115_d01.g1 PHD_FILE: MSMg01no115_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:05 2005
(257 letters)
>mm_chr9_116679822_116680478
Length = 657
Score = 458 bits (237), Expect = e-133
Identities = 252/257 (98%)
Strand = Plus / Minus
Query: 1 actatgcaagcctgcagaacagttcaggtctgactcctgtgaagttgaatcccgttaagt 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 457 actatgcaagcctgcagaacagttcagatctgactcctgtgaagttgaatcccgttaagt 398
Query: 61 aagtctgtaatctaagcgctcatgcagagagaagggaggtggagacaggagaatctctgt 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aagtctgtaatctaagcgctcctgcagagagaagggaggtggagacaggagaatctctgt 338
Query: 121 aaccatgggcactaaatagcctggcatacacagcagggcacaggagacactgcttcgaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 337 aaccatgggcactaaatagcctggcatacacagcagggcacaggagacactgctttgaac 278
Query: 181 aaggaagatgctaaggatggacatacaaggttatcccctgacttctacctgcatgctctg 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 277 aaggaagatgctaaggatggacatataaggttatcccctgacttctacctgcatgctctg 218
Query: 241 gcgtacatatacttgaa 257
| |||||||||||||||
Sbjct: 217 gtgtacatatacttgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space: 160704
Effective search space used: 160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
