Query= MSMg01no115_n21.b1 MSMg01no115_n21.b1 CHROMAT_FILE:
MSMg01no115_n21.b1 PHD_FILE: MSMg01no115_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:56 2005
(499 letters)
>mm_chr9_110597240_110598138
Length = 899
Score = 913 bits (472), Expect = 0.0
Identities = 493/500 (98%), Gaps = 2/500 (0%)
Strand = Plus / Plus
Query: 1 gagggcaagg-tgtgggtagtagggcccagaggcctgaacctgcagtgggaaacggtgga 59
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagggc-aggttgtgggtagtagggcccagaggcctgaacctgcagtgggaaacggtgga 259
Query: 60 tgggctgggaagactagacagcaccgcaactcttgggtcctctactcatgagcccccaat 119
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 260 tgggctgggaagactagacagcaccgcaactcctgggacctctactcatgagcccccaat 319
Query: 120 cccagttttacacagtgtcagttgcggtccatcctggagatgatactgagggccttagag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cccagttttacacagtgtcagttgcggtccatcctggagatgatactgagggccttagag 379
Query: 180 aatcagtgtctgagttccgggctggatgggacaaggctaagctgtgcctggtgcctccca 239
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aatcagtgtctgagttctgggctggatgggacaaggctaagctgtgcctggtgcctccca 439
Query: 240 acccagactctgatagggaggaaaaggtgccctcttctctcctttcttccttcccacttc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acccagactctgatagggaggaaaaggtgccctcttctctcctttcttccttcccacttc 499
Query: 300 tccttttccctgacctggagactcatccctagccattgtatcacacactgacacccagct 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcctttgccctgacctggagactcatccctagccattgtatcacacactgacacccagct 559
Query: 360 ctgaactctctcctgcagatgaccccagggacctgctgtctgtgagcacctgtgtgctgg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctgaactctctcctgcagatgaccccagggacctgctgtctgtgagcacctgtgtgctgg 619
Query: 420 cagagggtaagaaccacctgccccagtgccccggcaggtcacttggcaccacttttggag 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cagagggtaagatccacctgccccagtgccccggcaggtcacttggcaccacttttggag 679
Query: 480 gcccacttaccttgacactg 499
||||||||||||||||||||
Sbjct: 680 gcccacttaccttgacactg 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_n21.g1 MSMg01no115_n21.g1 CHROMAT_FILE:
MSMg01no115_n21.g1 PHD_FILE: MSMg01no115_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:56 2005
(392 letters)
>mm_chr9_110671368_110672160
Length = 793
Score = 706 bits (365), Expect = 0.0
Identities = 386/393 (98%), Gaps = 1/393 (0%)
Strand = Plus / Minus
Query: 1 tcacctgagaggctcagctcgccatgatatgcttcacaaacgctggaaggaaagggtgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tcacctgagaggctcagctcgccatgatatgcttcacaaacgctggaaggaaagggtgga 534
Query: 61 tgggaggctgggagtcagtggagctggacacacgactcctccccgagacgatccctaccc 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 533 tgggaggctgggagtcagtggagctggacacacgactcctcccccagacgatccctaccc 474
Query: 121 acactgaaaggggtccctatgccttcccccctccacctccgagaacctcccacctgctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 acactgaaaggggtccctatgccttcccccctccacctccgagaacctcccacctgctga 414
Query: 181 gctgggtcccccactcctcccaagagcttcactcccacagagctgagttccccaccccgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gctgggtcccccactcctcccaagagcttcactcccacagagctgagttccccaccccgc 354
Query: 241 ctcctccccag-aagacccccattctgcaaagcctaccttcatagttgatgcagccgttg 299
||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 353 ctcctccccagaaagtctcccattctgcagagcctaccttcatagttgatgcagccgttg 294
Query: 300 gagtcctcttgaccagccatcagtttctctacctcatcttctggcagtctctcacctgga 359
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 293 gagtcctcttgaccagccatcagtttctctacctcatcttctgtcagtctctcacctgga 234
Query: 360 aggggtgagaggttaagtcacgtctctgtgact 392
||||||||| |||||||||||||||||||||||
Sbjct: 233 aggggtgagcggttaagtcacgtctctgtgact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 793
Length adjustment: 9
Effective length of query: 383
Effective length of database: 784
Effective search space: 300272
Effective search space used: 300272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
