Query= MSMg01no115_o05.b1 MSMg01no115_o05.b1 CHROMAT_FILE:
MSMg01no115_o05.b1 PHD_FILE: MSMg01no115_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:57 2005
(305 letters)
>mm_chr9_99417297_99418001
Length = 705
Score = 551 bits (285), Expect = e-161
Identities = 297/301 (98%)
Strand = Plus / Minus
Query: 5 gaattcagcttacctgtgataactcggtaaccactgattctgactgggttatgttagaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaattcagcttacctgtgataactcggtaaccactgattctgactgggttatgttagaga 446
Query: 65 gaataaggacatggcaggaagtgagagctcagaagagtgttttagctgtaactaaattga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaataaggacatggcaggaagtgagagctcagaagagtgttttagctgtaactaaattga 386
Query: 125 cagtaacaccaaggaggtgttagctctgatctctgtgaggggcaagtcccatctttaatg 184
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 cagtaacaccaaggaggtgttagctctggtctctgtgaggggcaagtcccatctttaatg 326
Query: 185 atgccacatggcagtgctggctagaaagctgaagctcagctcatggggcaggacaagatg 244
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgccacatggtagtgctggctagaaagctgaagctcagctcatggggcaggacaagatg 266
Query: 245 tagagcagtgagcatgtcatacgcaggcattgtcagtgaacggttaagccgtacagagcc 304
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 265 tagagcagtgagcatgtcatacgcaagcattgtcagtgaacggttaagccatacagagcc 206
Query: 305 a 305
|
Sbjct: 205 a 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space: 206016
Effective search space used: 206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_o05.g1 MSMg01no115_o05.g1 CHROMAT_FILE:
MSMg01no115_o05.g1 PHD_FILE: MSMg01no115_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:57 2005
(571 letters)
>mm_chr9_99312144_99313114
Length = 971
Score = 1007 bits (521), Expect = 0.0
Identities = 553/571 (96%), Gaps = 13/571 (2%)
Strand = Plus / Plus
Query: 1 ccttaccactaacctctgccccagaatgataggagtaagagggctctgggctgagcagat 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttaccactaacctccgccccagaatgataggagtaagagggctctgggctgagcagat 260
Query: 61 atagaagactcaagagttcacagctcacttcatctcttatcaactagagcatctcttatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagaagactcaagagttcacagctcacttcatctcttatcaactagagcatctcttatc 320
Query: 121 gactggaatgctctgctgagaaagcactgaggctgtggagccccgaggacaaagggggag 180
|||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 321 aactggaatgctctgctgagaaagcactgaggctgtggagccc--ag-----------ag 367
Query: 181 gacaaaggggtggtgtggatttgcatgcctgtgctctgggaggcccttcccagctcaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gacaaaggggtggtgtggatttgcatgcctgtgctctgggaggcccttcccagctcaaat 427
Query: 241 ctgccttcctttccctccatcctctcccactttatcatacaagtcaggaatctcttccag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ctgccttcctttccctccatcctctcccactttatcatacaagtcaggaatctcttccag 487
Query: 301 aacccttgctctgccttgccctgtcacatgacttagagtagaacatgcccaggctgactt 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 488 aacccttgctctgccttgccctgtcacatgacttagagtagaacatgcctaggctgactt 547
Query: 361 ttgcatagtgatgactactacacatgctctgcattgtatgggttcccattcagggcagta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ttgcatagtgatgactactacacatgctctgcattgtatgggttcccattcagggcagta 607
Query: 421 gagagaaagcagaaactgggcaaagagggatgcaaagtgcacaaaacagaagctttaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 608 gagagaaagcagaaactgggcaaagagggatgcaaagtgcacaaaacagaagcgttaaag 667
Query: 481 agaaatcacacatctggattcttgttgtggaaactaggccaagggtgtctgctgtctgtg 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 agaaatcacacatctggatgcttgttgtggaaactaggccaagggtgtctgctgtctgtg 727
Query: 541 aatagcaaggaatgtttaatgttcagccctt 571
|||||||||||||||||||||||||||||||
Sbjct: 728 aatagcaaggaatgtttaatgttcagccctt 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
