BAC Information

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BAC

Clone NameMSMg01-115O10
Chromosome9 (Build37)
Map Location 83,028,483 - 83,028,611
singlet/doubletsinglet
Overlap geneHmgn3
Upstream geneLOC100039085, Irak1bp1, Phip, LOC100039144
Downstream geneLOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150, Bckdhb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115O10.T7 (MSMg01no115_o10.b1)MSMg01-115O10.TJ (MSMg01no115_o10.g1)
ACCAG327415AG327416
length736771
length of high quality
(start - end)
367 (42 - 408)155 (81 - 235)
definitionCHROMAT_FILE: MSMg01no115_o10.b1 PHD_FILE: MSMg01no115_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:58 2005CHROMAT_FILE: MSMg01no115_o10.g1 PHD_FILE: MSMg01no115_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTGTTCGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGCCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCTTGTTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGG
TCCCATTTGTCAATTCTCGATCTTACAGCACATGCCATTGCTGTTCTGTT
CAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCAC
TTAGATTTGACCTTAGTACAGGAGATAAGTATGGATCAATTCGCATTCTT
CTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTC
TTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGCGACCAT
AGGCGTGCGGGTTCATTTCTGGGCCTTCCATTCTATTCCACTGGCCTACC
CGTCTGTTTCCACTCCAGTCCCCTGGCCCCTCTTTCCTCCCTTCTTCTCC
TCTCATTCCCCCTCTTTACCTCTTGCAACGGTCTACCATAACTCCTCACA
TTCCCCTCCTATCCTCCCTCGCTCTACCCACCTTCN
NTTTCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATATTCCCTTCCCATGGT
TGAGATCACAGGCTCTGGAGCCTCTAGAACTGAATTCCCCGCAGCTCACA
AGGGCCTTGGGAAAGTGTCAGGGGCTGGTGCTTCAGTGTATAAGATGAAG
ATGAGTGGACCTGATTGGGGGGGGGGGGGCTGATTTCTCTCCCTTTCTTT
TTCTTCCCCCCTTTTTTCTCCCTTTCTCTTCCTTTCTTCATCTTTTTTTT
TTTTCTTCCCCCCCCTTTCTTTTTTTTTCTTTGCATCTATTTTGTTCTTT
TTTTTTCTTGTCTTTCCTTTTCCTCTCTCTCTCCCCATTTTTCTTCGTCC
CCCTTCCCCACATTTTTTTTTTGTTCCCCCCCCACCTTTCTCTTTTTTTT
TTGTCCACTAGCCCTCTAGACGCTCTCTCTCCGCTGACCCTTTTTCTTCT
ACCTCTCCTCCCTTCCCCTTCTTCTCTTCTTCTTTCCTATTTCCTCTTTT
TCCCTTTCTCTTACCTTCGTTTTTACGAATTCCCTTTTCTTCCGTCCCTT
TCTTCTTATCCCTTTTTTCCTCCCCCTTTTCTTTTTTGTGGAGTTACGTC
TATTGTCTTGTCGCCTTCTCTTCCTTGTATTCTTCTTCCCTTCCTATTTT
TTTTTTTTTTACTCTTTTCTTCCCTTTTTTGTCCGCCATTCTTACTTTAT
GGTCTTTTTTCTTCGTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_o10.g1 MSMg01no115_o10.g1 CHROMAT_FILE:
MSMg01no115_o10.g1 PHD_FILE: MSMg01no115_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:58 2005
         (155 letters)



>mm_chr9_83028283_83028837
          Length = 555

 Score =  250 bits (129), Expect = 4e-71
 Identities = 129/129 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatattcccttcccatggttgagatcacaggctctggagcctctagaactgaattcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatattcccttcccatggttgagatcacaggctctggagcctctagaactgaattcccc 260

                                                                       
Query: 61  gcagctcacaagggccttgggaaagtgtcaggggctggtgcttcagtgtataagatgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagctcacaagggccttgggaaagtgtcaggggctggtgcttcagtgtataagatgaag 320

                    
Query: 121 atgagtgga 129
           |||||||||
Sbjct: 321 atgagtgga 329


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 555
Length adjustment: 8
Effective length of query: 147
Effective length of database: 547
Effective search space:    80409
Effective search space used:    80409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)