CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCCGAACTCAGGAGGCAGAGGTAGGTAAATCTCAGTGAGGACAAG
TTCAGTATGATCTACATAGCGAGTTCCAGGACAGGCAAGTTATATGGAGA
GACCCTGTCACAAAATATGATTAGCAAAAACCAAAATGAAGTTATAGAAA
ACTTGAAGCATTATTATTTCTGATCCCCAGCTAACTTGGTATAGGGATAT
AAGGGAGTTATCCTCAGCTCCCAAGAAGGTGTCTCATAATCCACAGTTTA
GAGACCTTTCACCAACTTTATCTTCATACCAGAAAACATGAACAAATGCT
GCTTTTGTTCACTGAACAGTCACACTAGTTACATTTTCCTTAATATAAAG
TACAAACTGAAGTTAGCAGAATTGAACATCATGAAAACATGTGTATAAAT
ATGGACACACATACTGTACACTCAAAGACACATAAAAGCACAGACACATA
TAGAAGTCCACCACAAACCACACACACCTCACTTCTAGATAGCACTCTCA
TTTTACCTCTACTTCTGTCTGACTTTAACTCTCCTCCTCACCGCTCAGTT
CACAAACACAATTTCTCAATATCACATTGCCACATTCTATGTATCCCCAA
AGGGAGCAATTAAGAGTATCCTTCATAAACCAAACACTACAGTCTTTCTA
CATTTCCAACTTGGCTAGNTCTTACTTCTTGCTGTTTCTCTGTGTTCTG

NNNNNAAGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACCACTAATGGGAGTCGAT
GTGTTGGGGAGCAGGGGGGAGAGAGAGGGAATAGGAGATTTTCNGCGGCC
NCTCTCTCTNCCTCGTTTCTCTTTCTCTTCTGTTCCTCCTCCCTCCCCTC
TCCTTTCTCCCCGCCTCCCTTCTTCTTCTTCTTTCTGCTTCCCCCCGCCC
CCCGTTCTTCTTTTCTCTCTCGTTCCTCTGTCGCCTGCCGTGTCCTTCGT
TCCTCTTCCTTCCCTCCCCCCCTCGTTCTTCTTTTTTTTTTTTCCCGTCC
TCGCCTCTCCTTCGTCCGTTCCCGTTTTCTCTCTTCTCCCCCCCCCTTCT
CCTTCCTTCTTCCCTTCCCTTCTCCTTGTCTCGCTCTTTTTCCCCCCCCC
CGTTTTTTCCCCGTTCCCCTCCCCCTTCCTTCTTTCTCCTCCTCCTTCTT
TCCCTTTCCTTTTTTTTCTCTTCTCTCCTCTTCCTCTTTTCCCTCCTATT
ACCCCCTCCCCTCCCCGTTTCTCTTCCCTTCTTTCCTCCCTTTCGCCCTC
CTCTCTTTTCCCTTCTCCTCTTTTTTCGCCTCCTCCCTCTCTCTCTTTCT
TCCCCTTTTCCCCTTTATCCTCATTTCCTTTATTTCTCCGCCCCCCCCGC
TACGTTCCCCCCCGTTCTTCCTCTTCTGTCTCTTTCCGCCTTTCTCTCCT
TCCTTTCTCCCCTCCCCCCTTCTTTTTTCTTCTCGCTCCGTTCCTGTCGC
TTTATCCCTG

Query= MSMg01no115_o15.b1 MSMg01no115_o15.b1 CHROMAT_FILE:
MSMg01no115_o15.b1 PHD_FILE: MSMg01no115_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:59 2005
         (651 letters)



>mm_chr9_11916544_11917592
          Length = 1049

 Score = 1201 bits (621), Expect = 0.0
 Identities = 643/651 (98%), Gaps = 2/651 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaggcagaggtaggtaaatctcagtgaggacaagttcagtatgatctacatagcgagttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 948 gaggcagaggtaggtaaatctcagtgaggacaagttcagtatgatctacatagtgagttc 889

                                                                       
Query: 61  caggacaggcaagttatatggagagaccctgtcacaaaatatgattagcaaaaaccaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 caggacaggcaagttatatggagagaccctgtcacaaaatatgattagcaaaaaccaaaa 829

                                                                       
Query: 121 tgaagttatagaaaacttgaagcattattatttctgatccccagctaacttggtataggg 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 tgaagttatggaaaacttgaagcattattatttctgatccccagctaacttggtataggg 769

                                                                       
Query: 181 atataagggagttatcctcagctcccaagaaggtgtctcataatccacagtttagagacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 atataagggagttatcctcagctcccaagaaggtgtctcataatccacagtttagagacc 709

                                                                       
Query: 241 tttcaccaactttatcttcataccagaaaacatgaacaaatgctgcttttgttcactgaa 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 708 tttcaccaactttatcttcataccagaaaacataaacaaatgctgcttttgttcactgaa 649

                                                                       
Query: 301 cagtcacactagttacattttccttaatataaagtacaaactgaagttagcagaattgaa 360
           ||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||
Sbjct: 648 cagtcacactagttacatttttctta--ataaagtacaaactgaagttagcagaattgaa 591

                                                                       
Query: 361 catcatgaaaacatgtgtataaatatggacacacatactgtacactcaaagacacataaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 catcatgaaaacatgtgtataaatatggacacacatactgtacactcaaagacacataaa 531

                                                                       
Query: 421 agcacagacacatatagaagtccaccacaaaccacacacacctcacttctagatagcact 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 530 agcacagacacatatagaagtccaccacaaagcacacacacctcacttctagatagcact 471

                                                                       
Query: 481 ctcattttacctctacttctgtctgactttaactctcctcctcaccgctcagttcacaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ctcattttacctctacttctgtctgactttaactctcctcctcaccgctcagttcacaaa 411

                                                                       
Query: 541 cacaatttctcaatatcacattgccacattctatgtatccccaaagggagcaattaagag 600
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cacagtttctcaatatcacattgccacattctatgtatccccaaagggagcaattaagag 351

                                                              
Query: 601 tatccttcataaaccaaacactacagtctttctacatttccaacttggcta 651
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tatccttcataaaccaaacactacagtctttctacatttccaacttggcta 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1049
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1039
Effective search space:   665999
Effective search space used:   665999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)