Query= MSMg01no116_c08.b1 MSMg01no116_c08.b1 CHROMAT_FILE:
MSMg01no116_c08.b1 PHD_FILE: MSMg01no116_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:19 2005
(555 letters)
>mm_chr9_102537988_102538942
Length = 955
Score = 835 bits (432), Expect = 0.0
Identities = 461/472 (97%), Gaps = 5/472 (1%)
Strand = Plus / Minus
Query: 5 gaattcagttctggcttataagacaaggcttacactgcatgtgaggct-tgttagaacca 63
|||||||||||||| |||||||||||||||||||||||||||||| || | |||||||||
Sbjct: 471 gaattcagttctgggttataagacaaggcttacactgcatgtgagtctct-ttagaacca 413
Query: 64 tacacgtacaatccagggatctcactgcagggaatactgtgcagtgggtaagcctggaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tacacgtacaatccagggatctcactgcagggaatactgtgcagtgggtaagcctggaca 353
Query: 124 agtccaccaggaagagctatctcgacctcctctacttccaccttcgcctccacagttcaa 183
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 352 agtccaccaggaaaagctatctcgacctcctctacttccaccttcgcctccacagtccaa 293
Query: 184 gtcaccatcatctttttcagtgtaaagctcttttgtcttttacatttcctgtcttaactg 243
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gccaccatcatctttttcagtgtaaagctcttttgtcttttacatttcctgtcttaactg 233
Query: 244 aaatccatctactggggtgacttgcattaaaaaacaaataaacgacgacgac---aacaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 232 aaatccatctactggggtgacttgcattaaaaaacaaataaacgacgacgacgacaacaa 173
Query: 301 cacaacaaaaacaacaaataaaagctggatggtggtgtctcacacctttaatcctagcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 cacaacaaaaacaacaaataaaagctggatggtggtgtctcacacctttaatcctagcac 113
Query: 361 ttgggaggcagaggcaggctatctctgtgagttccagggcagcctggtctgcagagttag 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 ttgggaggcagaggcaggcgatctctgtgagttccagggcagcctggtctgcagagttag 53
Query: 421 ttccaggacagccagggtttatacaaagaaagtcttggaacaaaacaaaaca 472
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 ttccaggacagccagggtttatacaaagaaagtcttggaacaaaacaaaaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_c08.g1 MSMg01no116_c08.g1 CHROMAT_FILE:
MSMg01no116_c08.g1 PHD_FILE: MSMg01no116_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:19 2005
(529 letters)
>mm_chr9_102450305_102451233
Length = 929
Score = 911 bits (471), Expect = 0.0
Identities = 524/565 (92%), Gaps = 36/565 (6%)
Strand = Plus / Plus
Query: 1 agtgtcctggaggccatggctgtgcaacataaaaggccagtgatcgggaccaggtaggca 60
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 165 agtgtcctggagaccatggctgtgcaacataaaaggccagcgatcgggaccaggtaggca 224
Query: 61 gcacctcagactgagatgggacatgacaggaagccccagagca----------------- 103
|||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 225 gcacctcagactgagatgggacatgacaggaagccccaaagcacaggtcccctggtgagt 284
Query: 104 -------------------tggcgacaatccttaggataatcaataggagacaccacaat 144
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cccctgatggtaggggctatggcgacaatccttaggataatcaataggagacaccacaat 344
Query: 145 ccacactaccctgctttcgaacatgttggtccctgttgtagcgacagtcttccctccctc 204
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ccacactacccttcttttgaacatgttggtccctgttgtagcgacagtcttccctccctc 404
Query: 205 tctcctggaaaagccttgcctggccctcatccatcctccgggctcacatcatatttgtga 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tctcctggaaaagccttgcctggccctcatccatcctccgggctcacatcatatttgtga 464
Query: 265 ctcagaactctgcacaatcgggtgatgagaagggattggaacttcaccactgaactgcaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ctcagaactctgcacaatcgggtgatgagaagggattggaacttcaccactgaactgcaa 524
Query: 325 tttttttccatacagttttattcaaaaaatattttcatacaatatattccaattatggct 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tttttttccatacagttttattcaaaaaatattttcatacaatatattccaattatggct 584
Query: 385 ttcccctcccagatccttccaaactctccatccatccaccgccatgccctttctttctct 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ttcccctcccagatccttccaaactctccatccatccaccgccatgccctttctttctct 644
Query: 445 cattttggaaagcaaacaagcccatcggtggtgatgcacaccttcaaccctagcacttgg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 cattttggaaagcaaacaagcccatcggtggtgatgcacaccttcaaccctagcacttgg 704
Query: 505 gaggcagaagcgggtggatctgagt 529
|||||||||||||||||||||||||
Sbjct: 705 gaggcagaagcgggtggatctgagt 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
