Query= MSMg01no116_d20.b1 MSMg01no116_d20.b1 CHROMAT_FILE:
MSMg01no116_d20.b1 PHD_FILE: MSMg01no116_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:26 2005
(424 letters)
>mm_chr9_52156323_52157148
Length = 826
Score = 812 bits (420), Expect = 0.0
Identities = 424/426 (99%), Gaps = 2/426 (0%)
Strand = Plus / Minus
Query: 1 acagagcgatggatccctgagcaatggggcttttaagatctcaggggccttcacatctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 acagagcgatggatccctgagcaatggggcttttaagatctcaggggccttcacatctca 567
Query: 61 gtaattactctgtagagaaagattaagccaaaacttcaggctaacgactcaaatttaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtaattactctgtagagaaagattaagccaaaacttcaggctaacgactcaaatttaagt 507
Query: 121 cttgctcgactgtctatggcttcatgctttgaattactttatactttcaagtacctcag- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cttgctcgactgtctatggcttcatgctttgaattactttatactttcaagtacctcagt 447
Query: 180 -tttttttttttatttctatacttctgatgataagatctacctttgggatttgtacagaa 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttttttttttttatttctatacttctgatgataagatctacctttgggatttgtacagaa 387
Query: 239 ctaagtgagatcatgtaaccaacattcccaggaacacattagttaagtgacagatggcaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctaagtgagatcatgtaaccaacattcccaggaacacattagttaagtgacagatggcaa 327
Query: 299 cctggccatggccatttgtgctgtcaatgactaaatgagtggtctatcagaattcccttc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cctggccatggccatttgtgctgtcaatgactaaatgagtggtctatcagaattcccttc 267
Query: 359 tttcttggttgtccctaaaacaaaatattggacatatgtttaaaagcccaggttcctttc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tttcttggttgtccctaaaacaaaatattggacatatgtttaaaagcccaggttcctttc 207
Query: 419 catcca 424
||||||
Sbjct: 206 catcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 826
Length adjustment: 9
Effective length of query: 415
Effective length of database: 817
Effective search space: 339055
Effective search space used: 339055
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_d20.g1 MSMg01no116_d20.g1 CHROMAT_FILE:
MSMg01no116_d20.g1 PHD_FILE: MSMg01no116_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:26 2005
(288 letters)
>mm_chr9_52003297_52003984
Length = 688
Score = 528 bits (273), Expect = e-154
Identities = 282/285 (98%), Gaps = 1/285 (0%)
Strand = Plus / Plus
Query: 1 atagccactatgcctcaagatctccatgccaaaatcaaggtcagaaacttgtatctccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atagccactatgcctcaagatctccatgccaaaatcaaggtcagaaacttgtatctccca 261
Query: 61 gcctccagattaggatcactggtgagccttcaatgtctggattgtagttcattccagata 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 262 gcctccagattaggatcactggtgagccttcaat-tctggattgtagttcattccagata 320
Query: 121 tagtcaatttgacaaccaggaatagccactacactaggtatgccattatggtcaggtggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtcaatttgacaaccaggaatagccactacactaggtatgccattatggtcaggtggg 380
Query: 181 ggaaacacaagtatgccacatgttcaagacaaggaatgaatgtggaggagtgggagagga 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 ggaaacacaagtatgccacatgttcaagacaaggaatgaatgtggaggggtgggagagga 440
Query: 241 gactggaaagggtgttaggaacacaaggagacactaccacattta 285
|||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 gactggaaagggtgttaggaacacaaggggacactaccacattta 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
