BAC Information

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BAC

Clone NameMSMg01-116J09
Chromosome9 (Build37)
Map Location 27,600,311 - 27,600,595
singlet/doubletsinglet
Overlap geneOpcml
Upstream geneBC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b, Spata19, LOC666440, LOC100041202
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116J09.T7 (MSMg01no116_j09.b1)MSMg01-116J09.TJ (MSMg01no116_j09.g1)
ACCAG327930AG327931
length708708
length of high quality
(start - end)
524 (79 - 602)286 (80 - 365)
definitionCHROMAT_FILE: MSMg01no116_j09.b1 PHD_FILE: MSMg01no116_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:53 2005CHROMAT_FILE: MSMg01no116_j09.g1 PHD_FILE: MSMg01no116_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCGGAGTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAGAGTTAGAGAGAAGATGAATCTCAACTATCTAGGA
ACTGGAATGTGCTTTAAATCAAGCCTGACAGCTCACATGGCTGTCTCTCC
GTCTTGGTAATGGGAGGTCCCAGCATGCTGAACTTCTGCAGATTAAAACA
CTCTTTGCATTTATATACTATTTGAATCCAGGGTATTATTCTTCAGCAAA
TCATGGACCCTTACAACTGTTAGGTCTTCTTCATCAGATAAATAGTAAAT
AATAAATAACAAACAAAAGTAACTGAGCTAGGCATGGTGCTACATTCCTG
TAATTCCAGCACTCTAAAGGTTGAGACAAGTTCAAGTTAAAGGCATACCT
AGAGCTATATAGTGAAATTCTGTCTCAAATAAACAACAAAAAGTATAGCA
ATTAAAATATTCATGATGGCTGTGGATATATCTCATTGGCATGTTGTGCC
TAGCAAGCATAAAGTCCGAAGTTTGACCTCTAGTACTGCAAAGTAAGATA
AAATTAAACATTCAGGAAAACATAGGAAAGAGCGAAAGGACATAATTCCA
GGGGAGAATTGTAATTAAATAAAACAACAATAAGGGAAGTAGTGATTGTT
AAGTCTGTGTTTGATGCAAAACTTCCAATAACCCCACATACATTTTCATA
TGCACACC
TCCNAAAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAACTTAATGGGGAGGCATA
AAATTTCCAAATGAATTAAAATGTATCCAATAAAGTGGTGCAACATTATA
CAAGGGATATCTTTTCTTTTTTAAAAAATCATCAGTTTTCTCTTTCATCC
CAATAAGTTCCTTTCTTTTTTTCTAATTTTCTTTGTTAGCTTAGAAGAAC
TTTGGAGAATTAGGTTTAAATGAAAGGGAAGAAAACCTCACCGAGGCATC
CTGAATATAAAATGAAGAATTATGTGCTTCACCTATGAATGTGAGGGTTA
ACAATATTGGCATTTTTGTTTGCACACCCGCCCGGGAATTTAGGTCTAAG
CTAATGTTTAACGGAAAACATGCTATCTCCATTAGCAACATGAGGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGAAATGCCCCCT
AAAGGGTGAGGTTTAGTGTGGAAGACCCAGAGACCCTTTGATGCTGTCTA
AAATGTTGTGAAGCCTTCCAAGCCCCTTCAGCATTGTGTGAAAGATGCCT
GCAGGCATGGTCCTCTGCTTGCAAAAAGTTCTGAATCATTTACCACCCCT
AACAAGATGTCGCGGAAGCTGCAAGGAGTCTAGTAAGCGGACTGGGCAGG
CTTGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_j09.g1 MSMg01no116_j09.g1 CHROMAT_FILE:
MSMg01no116_j09.g1 PHD_FILE: MSMg01no116_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:53 2005
         (286 letters)



>mm_chr9_27600111_27600796
          Length = 686

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaacttaatggggaggcataaaatttccaaatgaattaaaatgtatccaataaagtggt 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 485 aaaacttaatggggaggcataaaatttccaaatgaattaaaatgtatttaataaagtggt 426

                                                                       
Query: 61  gcaacattatacaagggatatcttttcttttttaaaaaatcatcagttttctctttcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gcaacattatacaagggatatcttttcttttttaaaaaatcatcagttttctctttcatc 366

                                                                       
Query: 121 ccaataagttcctttctttttttctaattttctttgttagcttagaagaactttggagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ccaataagttcctttctttttttctaattttctttgttagcttagaagaactttggagaa 306

                                                                       
Query: 181 ttaggtttaaatgaaagggaagaaaacctcaccgaggcatcctgaatataaaatgaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttaggtttaaatgaaagggaagaaaacctcaccgaggcatcctgaatataaaatgaagaa 246

                                                        
Query: 241 ttatgtgcttcacctatgaatgtgagggttaacaatattggcatt 285
           |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 245 ttatgtgcttcacctatgaacgtgagggttaacaatattggcatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)