GGGGNGGCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCTATGTACCTCAGGGTGATCTCAGACTCACAGACA
TCCACCTGCCTTAGATTCCTCCGTGCTGGGATTAAAGGCTGCTGGTATGA
GTACAGTTTTAAACTACTTTATAAGCTATGTAAGATAATCATTAAGAAGA
TGCCCCTGGGAGCCGACAAAGAACTAGACCAATACAGGAGTAGGCCACCT
TTTATTTTTCCTCCTCCTCCTTTTTTTTTTTTTTTTTTGTTGTTGTTGTT
GAGAAAGCTCTTGAGTGTAGCTCAGGGTACCTCCAGTCTCCATCTTGTGT
CAGCATTTCAAGCTCTGGGATTACTGGCATGTACCACCAGGCCCCGGGAG
TACTGTTAATGAAAAATTTTAGCCTGGCCGTGCTGCTTTTCCCCAGCACT
TGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAC
AGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACTCTGTCTCAAA
AAACAAACAAACAAACAAACAAACAAACAAAAACAAAACCCCCAAATAAA
ATAAAACTCATGGCACTCTTGCCTCCCCTGAGTGCTGTGCTTACAGGTTT
ATGCCACCCTGCCCAGCAGCAGGTAGATGCTTAGTGTGGTAAGCAATAGA
AGCACCTGCT

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTCACTGATTCCACGTTGGCTGCCC
CAATCTGCAATCCCACAATGCATAAGACTTCCCCTTACTACCTCCTCCTT
CCTCAGCCCCTCCAGCAACTGTTGGGAAATGTTCAGACCTCTGCCAGTCT
GACTAGGGTAAGATAAAATCTCAGCTGTTTTGATTTGTATTTGTATTTGT
AACCCTAGCTACTAAGGTAGATGGACATTTCTGAGATATCCCTTAGCCTT
TCGTTTTCTTCTTCTGAGAACCCCTGCTCAGGTCGAAGGTGGCATCCTTC
AATGGGTCATTTGTTTGCTTGTTTTGACTCACTGCTTTTTGAGTTTTTTT
ATGTATTCTGAATATTAATATTCTGTCAGATTTATAACTGGCAACGATTT
TCTCCAATTCTGTGAGCTCCCTCTTCACCCAATTAGTTTGGGTTTTGGGT
TTGTTTTTTTTTTTTAATTATTTTATGTACATGAGTACACTGTCACTGTC
TTCAGACACACCAGAAGAGGGTATCAGATCCCACTATAGATGGTTGAGAG
CCACCATGTGGTTGCTGGGACTTGAGCTCAGGACCTCTGGAAGAGCCATC
TCTCCAGTCCCAATTAATAATTTTCTTAGCTGCACAGCAATGTTTTAC

Query= MSMg01no116_j21.b1 MSMg01no116_j21.b1 CHROMAT_FILE:
MSMg01no116_j21.b1 PHD_FILE: MSMg01no116_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:55 2005
         (578 letters)



>mm_chr9_113642806_113643782
          Length = 977

 Score =  810 bits (419), Expect = 0.0
 Identities = 535/585 (91%), Gaps = 29/585 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctatgtacctcagggtgatctcagactcacagacatccacctgccttagatt 63
           |||||||||||||||  |||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 204 ggaattctctatgtagatcagggtgatctcagactcacagagatccacctgcctcagatt 263

                                                                       
Query: 64  cctccgtgctgggattaaaggctgctggtatgagtacagttttaaactactttataagct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctccgtgctgggattaaaggctgctggtatgagtacagttttaaactactttataagct 323

                                                                       
Query: 124 atgtaagataatcattaagaagatgcccctgggagccgacaaagaactagaccaatacag 183
           ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 324 atgtaagataatcattaagaagatg-ccctgggagccgacaaagaactagatcaatacag 382

                                                                       
Query: 184 gagtaggccaccttttatttttcctcctcctccttttttttttttttttttgttgttgtt 243
           ||||||||||||||||||||||| ||||||||||  |||||| || || |||||||||||
Sbjct: 383 gagtaggccaccttttatttttcttcctcctcctccttttttgttgttgttgttgttgtt 442

                                                                       
Query: 244 gttgagaaagctcttgagtgtagctcagggtacctccagtctccatcttgtgtcagcatt 303
           |||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 443 gttgagaaagctcttgagtgtagctcagggtacccccaatttccatcttgtgtcagcatt 502

                                                                       
Query: 304 tcaagctctgggattactggcatgtaccaccaggccccgggagtactgttaatgaaaaat 363
           ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 503 tcaagctctgggattaccggcatgtaccaccaggccccgggagtaccgttaacgaaaaat 562

                                                                       
Query: 364 tttagcctggccgtgctgct-------ttt-ccccagcacttgggaggcagaggcaggtg 415
           ||||||||||||||||||||       ||| |||||||||||||||||||||||||||||
Sbjct: 563 tttagcctggccgtgctgctgaattcctttaccccagcacttgggaggcagaggcaggtg 622

                                                                       
Query: 416 gatttctgagttcgaggccagcctggtctacagagtgagttccaggacagccagggctac 475
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 t-tttctgagtttgaggccagcctggtctacagagtgagttccaggacagccagggctac 681

                                                                       
Query: 476 acagagaaactctgtctcaaaaaacaaacaaacaaacaaacaaacaaacaaaaacaaaac 535
           ||||| |||| ||||||||||   ||||   |||||   ||||| |||||||  ||||||
Sbjct: 682 acagaaaaaccctgtctcaaa---caaa---acaaa---acaaa-aaacaaa--caaaac 729

                                                        
Query: 536 ccccaaataaaataaaactcatggcactcttg-c-ctcccctgag 578
           |||     |||||||||||||||||||||||| | ||||||||||
Sbjct: 730 ccc-----aaaataaaactcatggcactcttgtctctcccctgag 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 977
Length adjustment: 10
Effective length of query: 568
Effective length of database: 967
Effective search space:   549256
Effective search space used:   549256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)