Query= MSMg01no116_k08.b1 MSMg01no116_k08.b1 CHROMAT_FILE:
MSMg01no116_k08.b1 PHD_FILE: MSMg01no116_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:57 2005
(423 letters)
>mm_chr9_60551696_60552525
Length = 830
Score = 694 bits (359), Expect = 0.0
Identities = 404/423 (95%), Gaps = 9/423 (2%)
Strand = Plus / Plus
Query: 7 gacttaagagaatgggtgacagtgaccaaatgccttccagaagccttagccatctctgcc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gacttaagagaatgggtgacagtgaccaaatgccttccagaagccttagccatctctgcc 266
Query: 67 atttgcaacagggactggatgtctattgattacattgataatgcaattattttaaaggag 126
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 267 atttgcaacagggactagatgtctattgattacattgataatgcaattattataaaggat 326
Query: 127 ttagatggggaaataaaaaaacctcccccatgagcacacaattgcctgtcctagcagaag 186
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttagatggggaaataaaaaaaactcccccatgagcacacaattgcctgtcctagcagaag 386
Query: 187 aaccaaattataccttttggaatcctacattattc-------atacttttcatactttgg 239
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 387 aaccaaattataccttttggaatcctacattattcttatcacatacttttcatactttgg 446
Query: 240 atatatgataagtagttatattgttgaattt-ttaaaattttgattctagagattagaaa 298
||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 447 atatatgataagtagttatattgttgaatttcttaaa-ttctgattctagagattagaaa 505
Query: 299 gccaatatctaattggtcgagcagctattatatcctggggccctagcgaggcactcccct 358
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 506 gccaacatctaattggttgagcagctattatatcctggggccctagcgagtcactcccct 565
Query: 359 gctatctcactcaacttctgtaataacagaatatcttagtattagaattaatactaggtg 418
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 566 actatctcactcaacttctgtaataatagaatatcttagtattagaattaatactaggtg 625
Query: 419 ttg 421
|||
Sbjct: 626 ttg 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 830
Length adjustment: 9
Effective length of query: 414
Effective length of database: 821
Effective search space: 339894
Effective search space used: 339894
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_k08.g1 MSMg01no116_k08.g1 CHROMAT_FILE:
MSMg01no116_k08.g1 PHD_FILE: MSMg01no116_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:57 2005
(288 letters)
>mm_chr9_60712400_60713087
Length = 688
Score = 542 bits (280), Expect = e-158
Identities = 286/288 (99%)
Strand = Plus / Minus
Query: 1 ttcatcacaataaatacgtactgacgaagggaaatgtccccactgtcttgacaggaaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttcatcacaataaatacgtactgacgaagggaaatgtccccactgtcttgacaggaaagt 309
Query: 61 gactaaacaggacgtgggtcatggtcacacccactgcgggaagaagcaatgccacacagt 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gactaaacaggacatgggtcatggtcacacccactgcgggaagaagcaatgccacacagt 249
Query: 121 gctaaggagatggaagtcttcgtcgcgtgcgccccctgctaagatcataccacctacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gctaaggagatggaagtcttcgtcgcgtgcgccccctgctaagatcataccacctacttt 189
Query: 181 gggtccatgaaggccactgaggggcactgcatttcctggaagtggagttacacacagttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gggtccatgaaggccactgaggggcactgcatttcctggaagtggagttacacacagttg 129
Query: 241 tgagctgcctcgtgggtactgggaatcaaacctaaccttctggaagag 288
||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tgagctgccgcgtgggtactgggaatcaaacctaaccttctggaagag 81
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
