BAC Information

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BAC

Clone NameMSMg01-117D19
Chromosome9 (Build37)
Map Location 92,723,153 - 92,723,577
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009
Downstream geneLOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117D19.T7 (MSMg01no117_d19.b1)MSMg01-117D19.TJ (MSMg01no117_d19.g1)
ACCAG328421AG328422
length703784
length of high quality
(start - end)
649 (51 - 699)36 (115 - 150)
definitionCHROMAT_FILE: MSMg01no117_d19.b1 PHD_FILE: MSMg01no117_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:43 2005CHROMAT_FILE: MSMg01no117_d19.g1 PHD_FILE: MSMg01no117_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGGGGATCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGGAT
CCGCGGAATTCATGTATGTTCCCTTTAAAGCTAATTCTATACTGATGACT
CAGGACTTCCAGCAAGTGCTGTGTTTGATCTGGAGGAATTAAGAAAAAAA
ATTGTGCTGCAAAGCTTGGTACCTATCTTCCTATTTTACTGCTTCTTTTA
GGTCTTGTAGATTATGAGTATCCATTTTTAAATTAAAATGCTTCTAAAAT
GTAAATAAAAATGTTGAAAGAATGTTTATCACTAGATACCTGTTGTAGTT
TGAATAAGAATAATCCTCACAGCCTCATATATTTTTGAATTGCTGGTTCT
CCATTGGTGGACAGTTTAGGAAGGCTTAGGAGGTATGCCTTTATTGGAGG
ATGTGTGCTACTAGAGGTGGGCTTTGAGGTTTCAAATGCCCATGACAGGC
TCAGTCTCTCTATGTCTACCTTTCTGGATTGGATATAAGTTTTCAGTCGC
TGCTTCAGTGCCAAGCCTGCCTGCCGGCTGCCATGCTATCTTCCATGCTG
ATCATGGACTCCCCCTCTGAAACCTGTAAGCAAACCTCCCAATTAAATGT
TCCTTTTTATATTTTACTTTGGCCCTGGTGCCTGTTCACATCAAGAAGAA
TAACTAAAGGCAAGAGCTTAGCTAGCAGCTGTTATCTGAAGACATTACAG
AAN
TTCTCCATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCNGGCCAGCCTGATTCTAAGA
CTGCATAGGCTACAAAGAGAAAACCTGTTAGGGGTTGGGGGGTGGGGGTG
AAGTCCTCCTCTTCTTTTCCTCCTCCCTCCTCTTTTCCTTCTTTCTCCTC
TCCTCCCTTTTCTCTCTTCCTCTCCCCTTCTTCCTCTCCTTCCCTCCTTT
CCCCCCTTTCTCCTTCCTCTTTTCCTCCTCTCCTCCTCCTTTTTCCTTCT
CTTTCCCCCCCCCTCTCCTCTCTCTCCCTCCTCTTTTTTTTTTTCCCTTT
TTTCCCTCCTTTCCTCTCTTCTCTCTCCTTCTTCCCCCCCCCCCCTCCTT
CTCTTTTCTCCTCCCCTCTTTTCTCTCCTCCCTTTCCCTCCCTCCCTTCT
TTTCCTCTTCTCCTTTCTCTTCTCCCTCTTTCTTTTCCCTTCCCCCCTCT
CCCCCTCCCTTTTCTTCTTCCTTCTTTCTCCCCTCTTCTCTTTCTTCTCC
TTTTCTTCCTCCTCCCCCCTTTTTCTTTCTTCCCCTTCCCCCCCTCTCCC
CCCTCCTTTTCTCTCCCCCCTCTCTTTTCCCTCCCCCTTCCTCTCCCTCC
CTCCCCCTTTTTTCCCTTCCTCCCTCTCCTCCTCTTCTTCCTTTCCCTTC
CCCTTCTCTTCTTCTCCTCTCTTCCTCTTTCTCTCTTTTTTCTTCTCTCC
CTCTTTNCTCCCCTCTTTCCCCTCTTCCTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_d19.b1 MSMg01no117_d19.b1 CHROMAT_FILE:
MSMg01no117_d19.b1 PHD_FILE: MSMg01no117_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:43 2005
         (649 letters)



>mm_chr9_92723153_92724204
          Length = 1052

 Score =  717 bits (371), Expect = 0.0
 Identities = 404/425 (95%), Gaps = 17/425 (4%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcatgtatgttccctttaaagctaattctatactgatgactcaggacttccagcaa 65
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gaattcatgtatgctctctttaaagctaattctatactgatgactcaggacttccagcaa 366

                                                                       
Query: 66  gtgctgtgtttgatctggaggaattaag---aaaaaaaattgtgctgcaaagcttggtac 122
           ||||||||||||||||||||||||||||   |||||||||||||||||||||||| ||||
Sbjct: 365 gtgctgtgtttgatctggaggaattaagaaaaaaaaaaattgtgctgcaaagctttgtac 306

                                                                       
Query: 123 ctatcttcctattttactgcttcttttaggtcttgtagattatgagtatccatttttaaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctatcttcctattttactgcttcttttaggtcttgtagattatgagtatccatttttaaa 246

                                                                       
Query: 183 ttaaaatgcttctaaaatgtaaat--------------aaaaatgttgaaagaatgttta 228
           ||||||||||||||||||||||||              ||||||||||||||||||||||
Sbjct: 245 ttaaaatgcttctaaaatgtaaataaaaatgttgaaagaaaaatgttgaaagaatgttta 186

                                                                       
Query: 229 tcactagatacctgttgtagtttgaataagaataatcctcacagcctcatatatttttga 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tcactagatacctgttgtagtttgaataagaataatcctcacagcctcatatatttttga 126

                                                                       
Query: 289 attgctggttctccattggtggacagtttaggaaggcttaggaggtatgcctttattgga 348
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 125 attgctggttctccattggtggacagtttaggaaggcttaagaggtatgcctttattgga 66

                                                                       
Query: 349 ggatgtgtgctactagaggtgggctttgaggtttcaaatgcccatgacaggctcagtctc 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  ggatgtgtgctactagaggtgggctttgaggtttcaaatgcccatgacaggctcagtctc 6

                
Query: 409 tctat 413
           |||||
Sbjct: 5   tctat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1052
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1042
Effective search space:   665838
Effective search space used:   665838
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)