BAC Information

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BAC

Clone NameMSMg01-117I23
Chromosome9 (Build37)
Map Location 106,109,243 - 106,174,970
singlet/doubletdoublet
Overlap geneTwf2, Tlr9, Alas1
Upstream geneNek11, Aste1, Atp2c1, EG434434, LOC664981, Pik3r4, E330026B02Rik, EG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m
Downstream geneWdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet, Dock3, Mapkapk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117I23.T7 (MSMg01no117_i23.b1)MSMg01-117I23.TJ (MSMg01no117_i23.g1)
ACCAG328660AG328661
length785738
length of high quality
(start - end)
321 (135 - 455)311 (73 - 383)
definitionCHROMAT_FILE: MSMg01no117_i23.b1 PHD_FILE: MSMg01no117_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:09 2005CHROMAT_FILE: MSMg01no117_i23.g1 PHD_FILE: MSMg01no117_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,174,650 - 106,174,970)(106,109,243 - 106,109,553)
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCNNCCNCCN
TGTAGTTNNNNCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTC
CGAGATCCGCGGAATTCCTCATCTATTTCCACCTTAATTCACTTAAATAT
AATTAGCTGTATGTGGTCAGTGGCTGCTGTATTGGCCAGCACTGTTACAG
AATGTGACTTGGCTCTGCGGATTCAGAAGTCATTGGCCACTTGGACTTCA
GTCTTCTGATAAGGTCATGAAGGGGTGTGGGGTCCAATCTACAGTACCTG
TGAAAGTTGTCTGGCCTGTTATCCAGGTGAAGGCAAGGGGTCAGAGACAC
TAGACCAACATGGATACCTGGAGCAGGCCAGAAAAGGATTGGCCATAGGT
CTTTATGCCCCATGAGAGAACCTGATGACTTTGAACACTGATACCCAAGA
GGTCAGAGCATAATGGGACTTGAAGAAGTATCCTGCAAACAGATGGTGAG
CAAAGAATAACTCTCACCTTCTCTGGCCGTGGTGGCGCATGCCTTTAATC
CCAGCACTTGGGAGGCAGAGGCAGAGTTAGAGGCAGAGGCAGAGGCAGAG
GCACAGGCAGAGGCTTACGACCATGCACAGTCTAAGGCACAGGTAGGTAA
ATTTCTGAGATTGATGCCAGCCTGTACTACAAAGAGAGTTCCAGAATATT
CAGTTTTAACAAGTAAAACCCTGTCTCAAAAAACATAAAAATACTTCAAC
CTCAATTATAAAACAATTAATAATAAACCCATACC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGCCAAGGCCCGGGCTGGCTCCATCC
GACTTATCAAAGTCATCATTGAGGACGGTGAGTGTCCCCCACGGGCTGGG
GCATGGAATGGAGGCCGAACCCAGTCACTTCTGGGGATAGGAGAGCTGGG
TATCAGCTTCCTTTCAGCCCCTCCCAGACCTCAGTCTCTGCATCTGAGAA
TGTAATGAGGCCTTTCACAGAGAGGTCTCATTGGGGTCCTGCAGTGGGGG
TAGAGGGCACCCTGTTGTACAGAGTCCTTCCTGCAGTTCTGTCTAACCTC
AGCCTGAGGCTGTGTGGCGTTTGAGATGAGCCTTGTCAGAGTATCGGGCT
AGATATGTGGTAAGGGTCCAGTGAGCCCTACTATATGTATGTTTTGTGTC
TGGGGGGTGGGAGGTAATGTGTATTGTGTTTCTTACTATTTCCTCAAACT
ATTTTTATTATATGTGTAGATCTGTATTTCTTCTTATTAATTTTTTATGA
ATAAAATATTGTTCTAAACTATATAACATATATTTTTTCATAATTTATCG
TATAATATCATCACTTCTGATCTGACACCTGACCACCCCTTTCTGTCTCT
ACCATCTTTTCGTTTCATGTTCTTATTATTGCCCTCTTTCTACAACTCCA
AAGAATTCGTTCTTCTATTTATCGTCCCGCCCTCATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_i23.b1 MSMg01no117_i23.b1 CHROMAT_FILE:
MSMg01no117_i23.b1 PHD_FILE: MSMg01no117_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:09 2005
         (321 letters)



>mm_chr9_106174450_106175170
          Length = 721

 Score =  605 bits (313), Expect = e-178
 Identities = 319/321 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taattcacttaaatataattagctgtatgtggtcagtggctgctgtattggccagcactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 taattcacttaaatataattagctgtatgtggtcagtggctgctgtattggccagcactg 462

                                                                       
Query: 61  ttacagaatgtgacttggctctgcggattcagaagtcattggccacttggacttcagtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttacagaatgtgacttggctctgcggattcagaagtcattggccacttggacttcagtct 402

                                                                       
Query: 121 tctgataaggtcatgaaggggtgtggggtccaatctacagtacctgtgaaagttgtctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tctgataaggtcatgaaggggtgtggggtccaatctacagtacctgtgaaagttgtctgg 342

                                                                       
Query: 181 cctgttatccaggtgaaggcaaggggtcagagacactagaccaacatggatacctggagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cctgttatccaggtgaaggcaaggggtcagagacactagaccaacatggatacctggagc 282

                                                                       
Query: 241 aggccagaaaaggattggccataggtctttatgccccatgagagaacctgatgactttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 281 aggccagaaaaggattggccataggtctttatgccccatgagagaacctgaggacattga 222

                                
Query: 301 acactgatacccaagaggtca 321
           |||||||||||||||||||||
Sbjct: 221 acactgatacccaagaggtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no117_i23.g1 MSMg01no117_i23.g1 CHROMAT_FILE:
MSMg01no117_i23.g1 PHD_FILE: MSMg01no117_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:09 2005
         (311 letters)



>mm_chr9_106109043_106109753
          Length = 711

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgccaaggcccgggctggctccatccgacttatcaaagtcatcattgaggacggtgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgccaaggcccgggctggctccatccgacttatcaaagtcatcattgaggacggtgag 260

                                                                       
Query: 61  tgtcccccacgggctggggcatggaatggaggccgaacccagtcacttctggggatagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcccccacgggctggggcatggaatggaggccgaacccagtcacttctggggatagga 320

                                                                       
Query: 121 gagctgggtatcagcttcctttcagcccctcccagacctcagtctctgcatctgagaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagctgggtatcagcttcctttcagcccctcccagacctcagtctctgcatctgagaatg 380

                                                                       
Query: 181 taatgaggcctttcacagagaggtctcattggggtcctgcagtgggggtagagggcaccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatgaggcctttcacagagaggtctcattggggtcctgcagtgggggtagagggcaccc 440

                                                                       
Query: 241 tgttgtacagagtccttcctgcagttctgtctaacctcagcctgaggctgtgtggcgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttgtacagagtccttcctgcagttctgtctaacctcagcctgaggctgtgtggcgttt 500

                      
Query: 301 gagatgagcct 311
           |||||||||||
Sbjct: 501 gagatgagcct 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)