Query= MSMg01no117_j22.b1 MSMg01no117_j22.b1 CHROMAT_FILE:
MSMg01no117_j22.b1 PHD_FILE: MSMg01no117_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:14 2005
(502 letters)
>mm_chr9_15195999_15196901
Length = 903
Score = 735 bits (380), Expect = 0.0
Identities = 455/502 (90%), Gaps = 37/502 (7%)
Strand = Plus / Plus
Query: 4 gaattc-actgtgatcccc--gcagctcttctccatacgtcgtactctaggaagcatcta 60
|||||| ||||||| ||| ||||||||||||||||| | |||||||||||||||||||
Sbjct: 204 gaattcaactgtga--ccctggcagctcttctccatacattgtactctaggaagcatcta 261
Query: 61 acacaggatggggagtagataggaatgtgtagcttgggtaagtgggctatggcagcctat 120
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 262 acacaggatggggagtagataggaatgtgcagtttgggtaagtgggctatggcagcctat 321
Query: 121 agtggtaacggcccagtccctctgctctcccattgtagacatttgctttctgctcttgtt 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 322 agtggtaacggcccagtccctctgctcttccattgtagacatttgctttctgctcttgtt 381
Query: 181 tcccagactacaatgatcatataaccatgcagtagacaagtatgatggaatcagaagtag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcccagactacaatgatcatataaccatgcagtagacaagtatgatggaatcagaagtag 441
Query: 241 agacagaaatgcacatgcatccagggttggtgggcatgttagtgcattttccttctgctt 300
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 442 agacagaaatgcacatgcatccagggttggtgggcatgggagtgcaatttccttctgctt 501
Query: 301 agggggcctggaggaaagttttatggagcccagaggaggaagggctcaactttcatcgtt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 502 agggggcctggaggaaagttttatggagcccagaggaggaagggctcaactttcgtcatt 561
Query: 361 gagaagtgagtgtggaaacagtctctccaaaatgccttttccttttcttcccctcaaaaa 420
||||||||||| |||||||||||||||||
Sbjct: 562 gagaagtgagt--------------------------------tttcttcccctcaaaaa 589
Query: 421 caaccaaatttgacatcctcaccaaaggcagcttagttactgctgcttctagagaccctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 caaccaaatttgacatcctcaccaaaggcagcttagttactgctgcttctagagaccctg 649
Query: 481 ccctcctctaggaacaggtgca 502
||||||||||||||||||||||
Sbjct: 650 ccctcctctaggaacaggtgca 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 903
Length adjustment: 10
Effective length of query: 492
Effective length of database: 893
Effective search space: 439356
Effective search space used: 439356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_j22.g1 MSMg01no117_j22.g1 CHROMAT_FILE:
MSMg01no117_j22.g1 PHD_FILE: MSMg01no117_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:14 2005
(559 letters)
>mm_chr9_15327435_15328392
Length = 958
Score = 1035 bits (535), Expect = 0.0
Identities = 553/559 (98%), Gaps = 1/559 (0%)
Strand = Plus / Minus
Query: 1 ctttcaggcaagttactggatttactgtaccttcatattaatcacagctggggagaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ctttcaggcaagttactggatttactgtaccttcatattaatcacagctggggagaataa 699
Query: 61 gcccgcccagtttcgatagcctgagcagcactgtggcaaatgggcctctgatgagggccc 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gctcgcccagtttcgatagcctgagcagcactgtggcaaatgggcctctgatgagggccc 639
Query: 121 tgggatcatgctcagagccccactcttcctccatgacccagaagccaggatgagggtggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tgggatcatgctcagagccccactcttcctccatgacccagaagccaggatgagggtggc 579
Query: 181 ccaggctacagtctgtgatcactgcaggaaaggaggcaggcagctggttcttggtttaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ccaggctacagtctgtgatcactgcaggaaaggaggcaggcagctggttcttggtttaca 519
Query: 241 cggctgccctctctccatccctcgggacctcacatggctttagcacaaagctaagtctct 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 cggctgccctctccccatccctcgggacctcacatggctttagcacaaagctaagtctct 459
Query: 301 tctgttcgagtaccaccaagcagagttttaaatgtccaagtctgaaaacaagaacaaaac 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tctgtttgagtaccaccaagcagagttttaaatgtccaagtctgaaaacaagaacaaaac 399
Query: 361 tatagactgcagtcaccctgctgttagcgtgtgttctctaaaacactcatcctcacagac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tatagactgcagtcaccctgctgttagcgtgtgttctctaaaacactcatcctcacagac 339
Query: 421 tttatgaactctctggaagccttcaggctttgaaactaggagacatagcagaacaggact 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 338 tttatgaactctctggaagccttcaggctttgaaactaggaggcatagcagaacaggact 279
Query: 481 ccattcagaacagaaggccagtgcaaactcacacccctttgcaaactcacacccggccct 540
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 278 ccattcagaacagaaggccagtgcaaactcaca-ccctttgcaaactcacacccggtcct 220
Query: 541 aacagcggacaacttcaga 559
|||||||||||||||||||
Sbjct: 219 aacagcggacaacttcaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 958
Length adjustment: 10
Effective length of query: 549
Effective length of database: 948
Effective search space: 520452
Effective search space used: 520452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
