Query= MSMg01no118_c18.b1 MSMg01no118_c18.b1 CHROMAT_FILE:
MSMg01no118_c18.b1 PHD_FILE: MSMg01no118_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:56 2005
(506 letters)
>mm_chr9_44891499_44892405
Length = 907
Score = 926 bits (479), Expect = 0.0
Identities = 500/507 (98%), Gaps = 1/507 (0%)
Strand = Plus / Minus
Query: 1 tctcactt-cacttacccaggatcactggaatcacaatcagtttcaggaggcccagcatt 59
|||| ||| |||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 707 tctcgcttccacttacccaggattactggaatcacaatcagtttcaggaggcaaagcatt 648
Query: 60 atcctttcaagttttcaatcttaagattaaaaaagaaatcagaaaattatatccagagaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 atcctttcaagttttcaatcttaagattaaaaaagaaatcagaaaattatatccagagaa 588
Query: 120 cactgttaactgaacaaactaacagtgagtgccaatgtgagccagattctgtctgggtca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 cactgttaactgaacaaactaacagtgagtgccaatgtgagccagattctgtctgggtca 528
Query: 180 ctggcacggcactgaccatgggagatgaagccctggcgcagctatgggttatatatgagg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ctggcacggcactgaccatgggagatgaagccctggcgcagctatgggttatatatgagg 468
Query: 240 aaggatgggaaagagaaaagcaaggctacacataaacaagacaacatcagattctgagaa 299
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 467 aaggatgggaaagagaaaagcaaggctacgcataaacaagacaacatcagattctgagaa 408
Query: 300 gggctacagcaaaacaaaaccacgtgatgtttgcagagacacgtggggtctgcttcaggt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gggctacagcaaaacaaaaccacgtgatgtttgcagagacacgtggggtctgcttcaggt 348
Query: 360 tggccagaggggatagtcagatgaaagttgcttttccaaacaaaaaaaggcaaatgagtc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tggccagaggggatagtcagatgaaagttgcttttccaaacaaaaaaaggcaaatgagtc 288
Query: 420 aacccgagatgttcctggatgcttcacacagatcaaacactgcgggatctaggatctgta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aacccgagatgttcctggatgcttcacacagatcaaacactgcgggatctaggatctgta 228
Query: 480 gcctctttttacctgtccctccggctg 506
||||| |||||||||||||||||||||
Sbjct: 227 gcctccttttacctgtccctccggctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 907
Length adjustment: 10
Effective length of query: 496
Effective length of database: 897
Effective search space: 444912
Effective search space used: 444912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_c18.g1 MSMg01no118_c18.g1 CHROMAT_FILE:
MSMg01no118_c18.g1 PHD_FILE: MSMg01no118_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:56 2005
(469 letters)
>mm_chr9_44760197_44761063
Length = 867
Score = 818 bits (423), Expect = 0.0
Identities = 454/469 (96%), Gaps = 10/469 (2%)
Strand = Plus / Plus
Query: 1 aatcacagtgatcttgatgcacaaagtagttacaaagcataaactcgtgcggattctcag 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 aatcacagtgatcttgatgcacaaagtagttacaaagcataaact-gtgcggattctcag 259
Query: 61 taggacagttaggaaaaaattccagacaccagcattaagtttagggttgaattacagata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taggacagttaggaaaaaattccagacaccagcattaagtttagggttgaattacagata 319
Query: 121 gggcacagaggtaaaacccttttgacccttttagcatccatccaagaggaaaatgggttt 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 320 gggcacagaggtaaaacccttttgaccctttcagcatccatccaagaggaaaacgggttt 379
Query: 181 agctactctttctcctcctcttttaaggaagaacagacatcaacatggcagcagaaattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agctactctttctcctcctcttttaaggaagaacagacatcaacatggcagcagaaattc 439
Query: 241 catctactgaaatactgtttttaagaaattaaagccttactaaggtaaaccctgcgcttt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 440 catctactgaaatactgtttttaagaaattaaagccttactaaggtaaaccctgtgtttt 499
Query: 301 ggggatacaggagtgggtttaaccattagatatagaagttttctgtttttcttttctttt 360
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 500 ggggatacaggagtgggtttaaccattagatatagaagttttctgtttt-ctttt----- 553
Query: 361 cttttttttttttttgtaaagaattattttatgtatatgaatacactgtggatatcttca 420
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 554 ---ttttttttttttgtaaagaattattttatgcatatgaatacactgtggatatcttca 610
Query: 421 gacatacccaaagagggaatcagatcccattgcgatggttgtgagccat 469
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gacatacccaaagagggaatcagatcccattgcgatggttgtgagccat 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 867
Length adjustment: 10
Effective length of query: 459
Effective length of database: 857
Effective search space: 393363
Effective search space used: 393363
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
