BAC Information

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BAC

Clone NameMSMg01-118D19
Chromosome9 (Build37)
Map Location 120,305,069 - 120,305,371
singlet/doubletsinglet
Overlap geneMyrip
Upstream geneAcvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, LOC666044
Downstream geneEif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1, Ulk4, Trak1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118D19.T7 (MSMg01no118_d19.b1)MSMg01-118D19.TJ (MSMg01no118_d19.g1)
ACCAG329163AG329164
length739721
length of high quality
(start - end)
301 (135 - 435)185 (69 - 253)
definitionCHROMAT_FILE: MSMg01no118_d19.b1 PHD_FILE: MSMg01no118_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:01 2005CHROMAT_FILE: MSMg01no118_d19.g1 PHD_FILE: MSMg01no118_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTTTTAATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTTTCAATTCCCAAAAACCACTGCATGTTTTGGGGT
TACCCATATGTATCTCTTCTTGACCAATTCTCCCAAACACATTTTTATAT
ACTCTCTAAAATACATGGAAAGCAGAACTTGCCTCTTTAGCCTTCTCTCA
GCATGTGGTTCAGTGGTGTTGAGTGTGTTCACAACACAGATCAGGGGTCA
CCCACCATCTACAGAAATATGTCTGCACACCAGGCTGCCCTCTGCCCAGG
TTACAGTCACTTCATGCTCCATCCTTCTCCTTTCACAGGCACCCACCCCT
CTGTTCTCTCTCTCTCTCTCTCTGTCACTCTCTGTGTCTCTGTCTTTCTC
TTTCTGTCTCTCTCTCTATGGCTGGCTGTCTCTATGAATTCTGACAACTT
TAAGTACCTCACAGACATGGAATCATGCTTTTTTTTTAACTCCATTTATG
CTTGAACTACGTTACAGCTTAATAAGAAGTCCATCATTCATATAATAGAT
TAACATATCTTCTCCCTCCAGTGCGATCCCTATATTTACCTTTCACAGAA
CCCCTGCATGCTTTCACCGAGAGCCTAATTGATGATTGCTTTATGTCGCA
ACCGCTCATAGACAGATGGATTCCCACTTGTCGATCACCATTCATGTTTT
TTACATTTTGATATGCCCGTTAACTATTCTGTAAACACA
GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTGTTTATAAGGAAGCAGGAAACACCAGTTGT
GGCAGCCCACTGCTTTAATCCCAGCACGCAGGAGGCAGAGGCAGGCGGAT
CTCTGAGTTCCAGAACAGCCTGGTCTACTGAGTAAGTTGCAGGACAGCCA
GGGCTACACAGAGAAACTTTGTTTCAAAAAGAAAAAGGAGACAGAAAAGG
TGACCAGAAGGGAGGGGCTGAGTGGAGGAAGGAAGGGAGCAGCTGTCCGG
TGAGGACTCTGGTAAGGGAAACCCGTGGGAATCACGTGACATGGCCCTGT
CATAAAACCCCGCATGCGTGCGCCAAACTAAGACAGCCAATGATGAGAAG
TGAGTGGTCTTCCTTGGAGCAGGAGCAGGCATCAGGTCTACATGAGCCTC
TGTGGGGGAAGCGTCTCTGGAGGCTTTAGGCTGCCTGCGCTCCTTGCCTG
GCAGTGTCACAAGGCTTCATCCTGACTCTTTGGCCTTTTGTTCGTCCTCT
CGCTCTGTCCCTATAGACCCTCTCCAGCCCCACTCCATTTCTTACCACAT
GGAACCCTCCCCGGCTTTCCTTTGCTCCCGGCGTGTTTACCCCTTATGGC
TGCCCCATAGGCTTTCCCAAATTATGTTTTCTCACACTGAGCACTTCCTG
TGCTTCATTCACCCCTCTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_d19.b1 MSMg01no118_d19.b1 CHROMAT_FILE:
MSMg01no118_d19.b1 PHD_FILE: MSMg01no118_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:01 2005
         (301 letters)



>mm_chr9_120304869_120305569
          Length = 701

 Score =  543 bits (281), Expect = e-159
 Identities = 297/303 (98%), Gaps = 2/303 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacacatttttatatactctctaaaatacatggaaagcagaacttgcctctttagcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacacatttttatatactctctaaaatacatggaaagcagaacttgcctctttagcctt 260

                                                                       
Query: 61  ctctcagcatgtggttcagtggtgttgagtgtgttcacaacacagatcaggggtcaccca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 ctctcagcatgtggttcagtggtgttgagtgtgttcacaacacagatcaggggttaccca 320

                                                                       
Query: 121 ccatctacagaaatatgtctgcacaccaggctgccctctgcccaggttacagtcacttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatctacagaaatatgtctgcacaccaggctgccctctgcccaggttacagtcacttca 380

                                                                       
Query: 181 tgctccatccttctcctttcacaggcacccacccctctgttctctctctctctctctct- 239
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 tgctccatccttctccagccacaggcacccacccctctgttctctctctctctctctctc 440

                                                                       
Query: 240 -gtcactctctgtgtctctgtctttctctttctgtctctctctctatggctggctgtctc 298
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtcactctctgtgtctctgtctttctctttctgtctctctctctatggctggctgtctc 500

              
Query: 299 tat 301
           |||
Sbjct: 501 tat 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)