BAC Information

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BAC

Clone NameMSMg01-118E05
Chromosome9 (Build37)
Map Location 38,659,900 - 38,660,538
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924
Downstream geneOlfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118E05.T7 (MSMg01no118_e05.b1)MSMg01-118E05.TJ (MSMg01no118_e05.g1)
ACCAG329183AG329184
length709713
length of high quality
(start - end)		254 (70 - 323)638 (76 - 713)
definitionCHROMAT_FILE: MSMg01no118_e05.b1 PHD_FILE: MSMg01no118_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:03 2005CHROMAT_FILE: MSMg01no118_e05.g1 PHD_FILE: MSMg01no118_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAAT
TCAAAGATTGGTACACAATTGGACCAAAATACAGTAATCTTTTCTCTTTA
TAAAATCTTCATTGACTAAATATCAGGTTAAGCCCAAGGAACATGCTAAA
AAAGTATCATTAGGTGCCAATAGATATTTATAGGTATTATTTACCACAAT
GGTATCATTGCATATATTTTGAAGTTGGAGGGGCGGGATCATATGAGGCC
CCACAACACAACTTCCAATTCCAGAAACTTAAGTTAGGATAATTTTATGG
GCTCAAAGAGTAATTGTTCTGCTTCTTTAAGAAGGGTAAAATTATTGAAC
AGGGCTATTCCCTCATAGAAGGGAGGGGTGGCAGAGAAACACATCCAACA
CTCCTCAAAATCAGGGGAACCATCCTCCTGTTTTTTTTATCTATTAGGGC
AAAGGCTGAGGCATTTAAAATGGAAAGCAATAATTCAGTAGATGGCTTAG
GGCCAGGAAGCATGGTAGGCTGATAAGGAATGCTCATCTGAACATGCGGG
GTAATTGATTCCACTGTGGAGGGGGGGCAACTTAGCTGTTGGTTGCGGCT
TGGCTGGGGGGTGATGTAGCTGGGGATTGGGACCTATGGAAGCCTTACGG
GTATTTGGAATCTCTCTGAGGAGCTGAAGTTTAAAAATGACTCCTCTGTA
ACTCCTTCC

ACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTGCTTTCTTGTTTATTTTGAATG
AATAGACCCTTTCAGAGCACAAGGAGATAGATCTTTAATCTATCCATTGT
ATGCATCTCTCCTTCATTTCCTCCTGGCCTCAGAATCCCCAGACAGAGTA
CATTCTACAATGTCACAATATCTCCCAGGCCTCCAGATCAGTACTTGGTA
ATTCTCACATCAGTCTGAAATAAAAACTTAGAAAATGTATAAAATCCAAA
TAATCTCAAATGTTAATATATTTTCATCACTCACAAGTAGGTAAAGAATT
TGGGATGAACAAAAAGTACACATTTCTTTATTCCTCATTCCAAGCTGGTA
CATTTTCACGTCTTCACATTGTATGACCATACTCTAGTTTTTAAATGTAT
GTTGAATATTGATTCTTGGTTTATATAGTGAATATTTATATTCATTCTCA
TTTTCACTTCATATTAAAACTCATTAAATGACTGGGCCAAAATAGCAAAC
TGACAAGCAATGAAGTCAGCCTTTTTAATGAAGATTTATTGATGCTAAAT
CTATTCACAATGTCTACATACTTTTCTGAAAATTAGATAAAATTCTGAAG
TAAAGTACTCATTACAGATATTGTTGTTTTGGTGTTTGAAGACTTTCTAG
AATGAACTCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_e05.g1 MSMg01no118_e05.g1 CHROMAT_FILE:
MSMg01no118_e05.g1 PHD_FILE: MSMg01no118_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:03 2005
         (638 letters)



>mm_chr9_38659700_38660738
          Length = 1039

 Score = 1174 bits (607), Expect = 0.0
 Identities = 631/639 (98%), Gaps = 1/639 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgctttcttgtttattttgaatgaatagaccctttcagagcacaaggagatagatctt 60
           ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 cctgcttacttgtttattttgaatgaatagagcctttcagagcacaaggagatagatctt 260

                                                                       
Query: 61  taatctatccattgtatgcatctctccttcatttcctcctggcctcagaatccccagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatctatccattgtatgcatctctccttcatttcctcctggcctcagaatccccagaca 320

                                                                       
Query: 121 gagtacattctacaatgtcacaatatctcccaggcctccagatcagtacttggtaattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtacattctacaatgtcacaatatctcccaggcctccagatcagtacttggtaattct 380

                                                                       
Query: 181 cacatcagtctgaaataaaaa-cttagaaaatgtataaaatccaaataatctcaaatgtt 239
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacatcagtctgaaataaaaaacttagaaaatgtataaaatccaaataatctcaaatgtt 440

                                                                       
Query: 240 aatatattttcatcactcacaagtaggtaaagaatttgggatgaacaaaaagtacacatt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatatattttcatcactcacaagtaggtaaagaatttgggatgaacaaaaagtacacatt 500

                                                                       
Query: 300 tctttattcctcattccaagctggtacattttcacgtcttcacattgtatgaccatactc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctttattcctcattccaagctggtacattttcacgtcttcacattgtatgaccatactc 560

                                                                       
Query: 360 tagtttttaaatgtatgttgaatattgattcttggtttatatagtgaatatttatattca 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 tagtttttaaatgtatgttgaatattgattcttggtttatatagtgaatatttagattca 620

                                                                       
Query: 420 ttctcattttcacttcatattaaaactcattaaatgactgggccaaaatagcaaactgac 479
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 ttctcattctcacttcatattaaaactcattaaatgactgggccaaaatagcaaactaac 680

                                                                       
Query: 480 aagcaatgaagtcagcctttttaatgaagatttattgatgctaaatctattcacaatgtc 539
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagcaacgaagtcagcctttttaatgaagatttattgatgctaaatctattcacaatgtc 740

                                                                       
Query: 540 tacatacttttctgaaaattagataaaattctgaagtaaagtactcattacagatattgt 599
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 741 tacatacttttctgaaaattagataaaactctgaagtaaagtactcattacagatattgt 800

                                                  
Query: 600 tgttttggtgtttgaagactttctagaatgaactccatt 638
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgttttggtgtttgaagactttctagaatgaactccatt 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1039
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1029
Effective search space:   646212
Effective search space used:   646212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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