BAC Information

Click to search

BAC

Clone NameMSMg01-118K03
Chromosome9 (Build37)
Map Location 52,656,591 - 52,657,216
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876, AI593442, Gm1715
Downstream geneDdx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118K03.T7 (MSMg01no118_k03.b1)MSMg01-118K03.TJ (MSMg01no118_k03.g1)
ACCAG329456AG329457
length710746
length of high quality
(start - end)
647 (41 - 687)84 (330 - 413)
definitionCHROMAT_FILE: MSMg01no118_k03.b1 PHD_FILE: MSMg01no118_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:33 2005CHROMAT_FILE: MSMg01no118_k03.g1 PHD_FILE: MSMg01no118_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTTGATAAACTCAGTATATTAGGTCCCAGAATACGGTTCAGTAGCTATAG
GATTTGCCACTGAGTCCGACAACCTAAGTTTAATCCCCAGGATCCAAATA
CTAGAAGAAGAGAACTGGCTTCCTCAGGTTGTCCTCCAGCCTCAGTGCTT
GCCCTAGCACATACATGCAACACACACACACACACACACACACACACACA
CACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGACAGACA
GACAGACAGACAGACAGACAGACAGAGAAAGAGACAGAGACAGAGACAGA
CAGAGAGACAGAGAGAGAGACTTTGTAAACCTATCTTCTTCACAGTTACA
ATTTCATCAATGCCATTAGAATAAGCTGAGTTAAAATAACTGACAGCCAT
ATCTAACAAGAATAAGTATTATGCTCAGGAAAGGATTCACAAAAGGTAAA
AAAAAGATATTTTTTTTCTGTCCAAAAAGGCTGAGCTGGATAGTTTTGTG
TTGACTTGACACAAGCTAGAGTCATTTTGAAGAGAGGGAGCCCAATTTGG
AAAGTGGCCCCAGCAGATTGCGCTGGGGACAAATCTGTGATCCATTTTCC
TGATTAATGATTGGCAGGAGAAGGTCCTATTCACTGTGGCTGACACTGCC
CCTGGACAGG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCCTTTAATTTGCTTACATCCAGTGA
GAAAAGTGACAAACCTCAGAGGACCTGATCAAGTTGAAAACACTTGAAGT
TTTGGGTTTTCAGTTTCAGTCTCTAGTCCCTGGCTATATGGAAACATCCC
AGACTACTCAGAGGAGATTCTAACAAAGGCATTTGTCCAGAGAACTATCT
CAATCTGGGTGAGGTGACTTTGTTCAAGGGACGGAGAAGAACAGTTATCA
GGCCAAGGTTAGCGTTGTAGGGGTGGGCGCTCATAGTCAGACCTTAGTGG
TTCTCTAGCTAGCGTGAGAGGGATGAAGAAAAGGAGGTAGGGGTGGAGTG
GAAGAGGAAGAGGACACCCCCCCGTACATCGCAATCTCCCGTTGTCGGTG
GGCCGTACATTGCTTTCGCTTATCGTCTTCTATTTCTGTTTTTCTTTCGC
CGTTTCGTCTTATCGTCTCTGCTCTCTTTCCCTTTCTATTAAATTCTAAA
ACCACACTTAATTTTTTCACTTTCTCTTCTCACCATCTTTACTGCTTGTC
TTATTCTACTCCTCAATTCCTATATCCGCGTTTATCTATTCTTCTCCCTC
TACCTTTGGATCTTTTTTTTTTATTTACTCCACCTCCTTTCCATTCTTCT
TCTTTGCCTTTATCTATTTCATCTATATTTCTTTTCGCCTATCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_k03.b1 MSMg01no118_k03.b1 CHROMAT_FILE:
MSMg01no118_k03.b1 PHD_FILE: MSMg01no118_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:33 2005
         (647 letters)



>mm_chr9_52656374_52657417
          Length = 1044

 Score = 1060 bits (548), Expect = 0.0
 Identities = 615/646 (95%), Gaps = 22/646 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccttgata-aactcagtatattaggtcccagaatacggttcagtagctatagga 62
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ggaattccttgatacaagtcagtatattaggtcccagaatacggttcagtagctatagga 277

                                                                       
Query: 63  tttgccactgagtccgacaacctaagtttaatccccaggatccaaatactagaagaagag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tttgccactgagtccgacaacctaagtttaatccccaggatccaaatactagaagaagag 337

                                                                       
Query: 123 aactggcttcctcaggttgtcctccagcctcagtgcttgccctagcacatacatgcaaca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aactggcttcctcaggttgtcctccagcctcagtgcttgccctagcacatacatgcaaca 397

                                                                       
Query: 183 cacacacacacacacacacacacacacacacagagagagagagagagagagagagagaga 242
           |||||||||||||||||||||||||||||||| | | | | |||||||||||||||||||
Sbjct: 398 cacacacacacacacacacacacacacacacacacacacacagagagagagagagagaga 457

                                                                       
Query: 243 gagagagtgagacagacagacagacagacagacagacagacagagaaagagacagagaca 302
           |||||||          |||||||||||||||||||||||||||||||||||    ||||
Sbjct: 458 gagagag----------agacagacagacagacagacagacagagaaagaga----gaca 503

                                                                       
Query: 303 gagacagacagagagacagagagagagactttgtaaacctatcttcttcacagttacaat 362
           |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 504 gagacagacagagagacagagagaga-acgttgtaaacctatcttcttcacagttacaat 562

                                                                       
Query: 363 ttcatcaatgccattagaataagctgagttaaaataactgacagccatatctaacaagaa 422
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttcatcaatgccattaaaataagctgagttaaaataactgacagccatatctaacaagaa 622

                                                                       
Query: 423 taagtattatgctcaggaaaggattcacaaaaggtaaaaaaaagatattttttttctgtc 482
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||
Sbjct: 623 taagtattatgctcaggaaaggattcacaaaaggtaaaaaaa-gatatttttt--ctgtc 679

                                                                       
Query: 483 caaaaaggctgagctggatagttttgtgttgacttgacacaagctagagtcattttgaag 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 680 caaaaaggctgagctggatagttttgtgttgacttgacacaagctagagtcattttgaa- 738

                                                                       
Query: 543 agagggagcccaatttggaaagtggccccagcagattgcg-ctggggacaaatctgtgat 601
           ||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 739 agagggaacccaatttggaaagtggccccagcagattg-gtctggggacaaatctgtgat 797

                                                         
Query: 602 ccattttcctgattaatgattggcaggagaaggtcctattcactgt 647
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ccattttcctgattaatgattggcaggagaaggtcctattcactgt 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1044
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1034
Effective search space:   658658
Effective search space used:   658658
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)