BAC Information

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BAC

Clone NameMSMg01-118K11
Chromosome9 (Build37)
Map Location 39,371,128 - 39,371,739
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958
Downstream geneOlfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118K11.T7 (MSMg01no118_k11.b1)MSMg01-118K11.TJ (MSMg01no118_k11.g1)
ACCAG329471AG329472
length701705
length of high quality
(start - end)
622 (41 - 662)77 (238 - 314)
definitionCHROMAT_FILE: MSMg01no118_k11.b1 PHD_FILE: MSMg01no118_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:34 2005CHROMAT_FILE: MSMg01no118_k11.g1 PHD_FILE: MSMg01no118_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTCC
ACCCCTCCCCCCCAAAGTCTTTGTGGTACCTCCTAGCATATACACTGACT
AGCAAGGAAGAATCTTCCAGTCCAATTCCAGGTCTATTTTTCTTTGTCCA
TAACCAAGATATGTGATGTCTTCATCAACACAGTCTTACCTTTTAGTTCT
TCTGGGTAGCCAAGAACAATGCCAATAACCTGTGTTTTTCTTATACATTC
CAGGACCTCACTGATAATAACTTATAGGAAGTTATTGTATATCTGCACTG
GGATTTCATTTGCTTAGCCATGACTTCAAGAATTGATATTATCTACTTAT
GTAGAAATCTTCCATACAAATTCTTTTAAATTTAAATACATATTTTACAT
AAGTGTTTTTAAGTAAATTTTATAATAATGTGTCAATATTTTATTCTTAC
ATCCTTGGTTCTTGCTAACACATCCCCCTTTATTCTATCCCTTAGCCCTT
TCCCTGTTAAATGTTACACCTAAATAGTTCTCCTTCTATTTTCAGTTCAT
CACACTTTCAGTCCCTCCACTATCATAGCACCTTCTAACTCTCTTGCTAT
CTTCCTGATCATATCTAACATCCCAGGCTCAACACAAATCAAATCAGAGT
TCTATGATTTGAAGCAGTGGTCCTTATTTGGACACAAACATGCAGCACTT
T
CCATGCTGTGGTAGGCCTGGCGGCGCCTGTTCCCAAATTGAGGTGAACTA
TAGAATTTCCGCGAAATTCTTTGTTCAGCTCTGAGCCCCATCTTTTAAGG
GGGCTATTTGATTTTCTGGAGTCGACCCTCTTGAGTTCTTTATATATATT
GGATATTATTCCCCTATTTGATTTAAGATAGGTAAAGATCCTTTCCCAAT
CTGTTTGCGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAG
CTTTGCAGTTTCATGACGGTCCCATTTGTCAATCCTCCATCTTAAAGCAC
GAGCCCTTGCTGTTCTATTCAGCAATTTTTTTCCCTGTGCCCATATCTTC
GAGACTTTTCCCCACTTTCTCGTCTATAAGTTTCAGTGTCTCTGGTTTTA
TGCGGAGTTCCTTGCTCCACTTAGATTTGACCTCAGTATAGGAGAGAGGA
ATGGGTCAATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCAC
CATTTGTTGAAAATGCTGTCTATTTTCCACTAGATGATTTTAGCTCCCTT
GCCGAAATTCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGCCTTCAA
TTCTATTCCATTGGTCTACTTGTCTGCTACTATACCTGTACCATGCAGTT
ATTATCACATTTGCTCCGGAAGTAAAGCTTTAGGTCATGCATGGTGATTC
CACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_k11.b1 MSMg01no118_k11.b1 CHROMAT_FILE:
MSMg01no118_k11.b1 PHD_FILE: MSMg01no118_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:34 2005
         (622 letters)



>mm_chr9_39370918_39371939
          Length = 1022

 Score = 1056 bits (546), Expect = 0.0
 Identities = 595/612 (97%), Gaps = 5/612 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  tccccccc--aa-agtctttgtggtacctcctagca-tatacactgactagcaaggaaga 71
           ||||||||  || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 211 tcccccccttaacagtctttgtggtacctcctagcagtatacactgactagcaaggaaga 270

                                                                       
Query: 72  atcttccagtccaattccaggtctatttttctttgtccataaccaagatatgtgatgtct 131
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atcttccagtccaatttcaggtctatttttctttgtccataaccaagatatgtgatgtct 330

                                                                       
Query: 132 tcatcaacacagtcttaccttttagttcttctgggtagccaagaacaatgccaataacct 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tcatcaacacagtcttaccttttagttcttctgggtagccaagaacaatgccaataacct 390

                                                                       
Query: 192 gtgtttttcttatacattccaggacctcactgat-aataacttataggaagttattgtat 250
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 391 gtgtttttcttatacattccaggacctcactgattaataacttataggaagttattgtat 450

                                                                       
Query: 251 atctgcactgggatttcatttgcttagccatgacttcaagaattgatattatctacttat 310
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 atctacactgggatttcatttgcttagccatgacttcaagaattgatattatctacttat 510

                                                                       
Query: 311 gtagaaatcttccatacaaattcttttaaatttaaatacatattttacataagtgttttt 370
           |||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||||
Sbjct: 511 gtagaaatcttcaatacaaattcttttaaacttaaatacatatttaaaataagtgttttt 570

                                                                       
Query: 371 aagtaaattttataataatgtgtcaatattttattcttacatccttggttcttgctaaca 430
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 571 aagtaaattttataataatgtgtcaatattttattctcacatccttggttcttgctaaca 630

                                                                       
Query: 431 catccccctttattctatcccttagccctttccctgttaaatgttacacctaaatagttc 490
           ||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 631 catccccctctattctatcccttaaccctttccctgttaaatgttacacccaaatagttc 690

                                                                       
Query: 491 tccttctattttcagttcatcacactttcagtccctccactatcatagcaccttctaact 550
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 691 tccttctattttcagttcatcacactttcagcccctccactatcatagcaccttctaact 750

                                                                       
Query: 551 ctcttgctatcttcctgatcatatctaacatcccaggctcaacacaaatcaaatcagagt 610
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 751 ctcttgctatcttcctgatcatatctaacatcccaggctcaacataaatcaaatcagagt 810

                       
Query: 611 tctatgatttga 622
           ||||||||||||
Sbjct: 811 tctatgatttga 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)