BAC Information

Click to search

BAC

Clone NameMSMg01-118K14
Chromosome9 (Build37)
Map Location 50,194,075 - 50,194,356
singlet/doubletsinglet
Overlap genenone
Upstream geneDrd2, Ankk1, Ttc12, Ncam1, EG667975, LOC100042806, LOC100043346
Downstream geneLOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118K14.T7 (MSMg01no118_k14.b1)MSMg01-118K14.TJ (MSMg01no118_k14.g1)
ACCAG329477AG329478
length850698
length of high quality
(start - end)
---282 (76 - 357)
definitionCHROMAT_FILE: MSMg01no118_k14.b1 PHD_FILE: MSMg01no118_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:35 2005CHROMAT_FILE: MSMg01no118_k14.g1 PHD_FILE: MSMg01no118_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATATCGAGAGGATCCGCGGAATTCCAGGGCCTAGCAGTGAAAGTG
GGTGGGTGGGGGAGTGGCTCGCCTCTCACCACCTTTTTTCACTTTTACCC
CCTCATATATTGTTTATCTTAATTATCTAATATAATTTCCACTTTAAATC
CCCCTTTATATCCTACCCATCCATCCCCCCCTCACTTTACTTCTATACAC
GATATAATCAACTTTCTACACATTCTTCGATCAAACAATGAAATTTCTAT
TACTGCCGTACCCTTCTTCTACCTTCTATTCTATCACCTTCCTCACATAA
TTACCACTAAGCTATCTATCCAACATTTTTTTTTTTCTCACCCACTATAC
AATTCTCCATCTTTCTCCATAACTTCTTTTTTTTTATTCCCCCCCCCCCC
CACCCACTATCCAGTACTGCTCAGTTAATAGACGAATACCTTTATGTACC
ACCCTCCATAAAAAAAAATACTACTATCCTGATCGTCCCGACAACATATC
TCATTAACACATAGATACGACTACTTATATAACTACTGTTACCTAACACC
CTCAAACATCACCATTAATCACCCTCCAATCCATCTCATCACTAATACTA
TATTATCTTATCCCCACCACAACCACTCACATCTCACCAACCATACCACT
CCCTAATAATGTATTAACCCTAAATTCTCCACCATTACACCCATCTTCTT
TTCACAGTTCCACCCGCGACAAGTCTTTTCTCTCACGCTTCTATTTATCC
CCATATATATAACTCACATGTCCAACTCTCGAATACCATCCTCTCCCTTA
ACAATATATCCCCTTACCCACCTTTTTTTCCTCCCTTACGTCCTTCGCTN

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACTCCATGGTGACTAAGCATCCAA
ATATATGAGTTTATAGGGAACATCCTTATTCTAACTACCACATGGACTCA
GGCTCTGAAACTGTCGGCCCCAAATTAAACATAGGAGAAAGAGGGGAATA
GACAAGTTCTTATAATGCTGAATTTAACTTAATTTTTTTTCTTTTTTGCT
TTTAAAATGTTATTTTGGAGAAATGGTTGATAGGAGTAGATAGTTTTTTT
TTTTAATTGACTTTGCTAGAATAATTTAGAAAAATCAACAACCCTGTCAG
TTACACACTCTTTTTTTCTCACACCCCCCCCCCCTTTCCTTTTGGGGGTT
GTGGGTAGAATTCAGGTTCCACATATGCTAAGACAATTGTCTACTATGGA
GCTATGTGTAGCCCAAGTCTAAAACACTCTTACTTAATTGATATTCATTG
TCTCTGGATCCCATGACATATATCTCCCGTATTATTGAGCGTGCTTCCCC
TCTCTTCTGAGAGAGTGGTCTCTCCCTAGAGCCCAATGTATTCTTAGAAT
ATCCTACCCATTTGGTCTATATCATCTCTTTTTCCATTTGACTATTGATC
GACCCTGCACTTGTGCGAAAATCCATATCTTAGCCCCCTTCTCACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_k14.g1 MSMg01no118_k14.g1 CHROMAT_FILE:
MSMg01no118_k14.g1 PHD_FILE: MSMg01no118_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:35 2005
         (282 letters)



>mm_chr9_50193875_50194556
          Length = 682

 Score =  507 bits (262), Expect = e-148
 Identities = 277/282 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactccatggtgactaagcatccaaatatatgagtttatagggaacatccttattctaac 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 cactccatggtgactaagcatccaaatatatgagtttatagggaacattcttattctaac 260

                                                                       
Query: 61  taccacatggactcaggctctgaaactgtcggccccaaattaaacataggagaaagaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taccacatggactcaggctctgaaactgtcggccccaaattaaacataggagaaagaggg 320

                                                                       
Query: 121 gaatagacaagttcttataatgctgaatttaacttaattttttttcttttttgcttttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatagacaagttcttataatgctgaatttaacttaattttttttcttttttgcttttaa 380

                                                                       
Query: 181 aatgttattttggagaaatggttgataggagtagatagtttttttttttaattgactttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgttattttggagaaatggttgataggagtagatagtttttttttttaattgactttg 440

                                                     
Query: 241 ctagaataatttagaaaaatcaacaaccctgtcagttacaca 282
           |||||| ||   ||||||||||||||||||||||||||||||
Sbjct: 441 ctagaaaaaaagagaaaaatcaacaaccctgtcagttacaca 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)