Query= MSMg01no118_m13.b1 MSMg01no118_m13.b1 CHROMAT_FILE:
MSMg01no118_m13.b1 PHD_FILE: MSMg01no118_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:44 2005
(639 letters)
>mm_chr9_117127410_117128447
Length = 1038
Score = 888 bits (459), Expect = 0.0
Identities = 520/541 (96%), Gaps = 6/541 (1%)
Strand = Plus / Minus
Query: 103 agtgcacactgttacagagatcaaagacttccagattgccctaacactagagtgcactct 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 agtgcacactgttacagagatcaaagacttccagattgccctaacactagagtgcactct 979
Query: 163 aaattataaagcaattggcagggattttaaatctctttgcaggatttatttttttat--t 220
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 978 aaattataaagcaattggcagggattttaaatctttttgcaggatttatttttttattat 919
Query: 221 tttttt-aagagtgtgcatgtgtgcgtgcaagcacacatgtgtgcgcacacacacataag 279
|||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 918 ttttttaaagagtgtgcatgtgtgcgtgcaagcacacatgtgcgtgcacacacacataag 859
Query: 280 cacaggaacctgtagagtccagaagagattattgactgttgatg-gctgctccatctggg 338
|| ||||||||| ||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct: 858 cagaggaacctgcagagtccagaagagattgttgactgttga-gagctgctccatctggg 800
Query: 339 ttctgggaattgaactcaggtcctctccaagagaaatgcatgttcttaaccactgaataa 398
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 799 ttctgggatttgaactcaggtcctctccaagagaaacgcatgttcttaaccactgaataa 740
Query: 399 tctctccaatcccaggaagtaaaaatcacacatctccagttaataattttgttctagcag 458
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 739 tctctccaatcccaggaagtaaaaatcacacatctccagttaacaattttgttctagcag 680
Query: 459 tgttttttttaatttttggctgattactgataaagtggtgcatataatctttcgatggct 518
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgttttttt-aatttttgactgattactgataaagtggtgcatataatctttcgatggct 621
Query: 519 atataatcttttcccagacaccacagggcagatacacatatgaactcactgagtctgtga 578
|||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 620 atataatcttatcccagacacaacagggcagatacacatatgaacttactgagtctgtga 561
Query: 579 cagtgtgttcaagaccagtacaagctcaaggcagctaaaactcccagcataaaggaaggg 638
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 560 cagtgtgttcaagaccagtacaagctcaaggcagctaaaactcccagcacaaaggagggg 501
Query: 639 a 639
|
Sbjct: 500 a 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1038
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1028
Effective search space: 646612
Effective search space used: 646612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_m13.g1 MSMg01no118_m13.g1 CHROMAT_FILE:
MSMg01no118_m13.g1 PHD_FILE: MSMg01no118_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:44 2005
(569 letters)
>mm_chr9_117058059_117059026
Length = 968
Score = 1069 bits (553), Expect = 0.0
Identities = 562/565 (99%), Gaps = 1/565 (0%)
Strand = Plus / Plus
Query: 4 atcaattttcttggagctggagaggtagcttagcagctaagagcacttgctgttttgcag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 atcaattttcttggagctggagaggtagcttagcagctaagagcacttgctgttttgcag 263
Query: 64 ataacccaaattcagaccccagtatccacaatatgtggctcataactgcttataacttca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ataacccaaattcagaccccagtatccacaatatgtggctcataactgcttataacttca 323
Query: 124 atttgggggaggacctgataccttctactggctcccatggacacctgaacacacaggtgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atttgggggaggacctgataccttctactggctcccatggacacctgaacacacaggtgc 383
Query: 184 acatacacacagagaaattcgcatacatctacacaaataatgaaaataaaattaaaaatt 243
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acatacacatagagagattcgcatacatctacacaaataatgaaaataaaattaaaaatt 443
Query: 244 ctttttgtcttcatattaaaaatgatttcatagactcattcctctccttcatttacaata 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctttttgtcttcatattaaaaatgatttcatagactcattcctctccttcatttacaata 503
Query: 304 gtgtgattattcacatattggtatcctaccgtggaccttgcattccttttaggcaatcta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtgtgattattcacatattggtatcctaccgtggaccttgcattccttttaggcaatcta 563
Query: 364 gcatgtcttaattctcagaatcccaaatgttctgtgttagagaatacatctccacaatat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcatgtcttaattctcagaatcccaaatgttctgtgttagagaatacatctccacaatat 623
Query: 424 tgatagagatgggaataaatgcatataaggctagacagtatattatgttgtcatatgaaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgatagagatgggaataaatgcatataaggctagacagtatattatgttgtcatatgaaa 683
Query: 484 gagtctgttctgctagatgtttaataaaaacactgtgatgtttaaaaaaaaaaagcaaag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 684 gagtctgttctgctagatgtttaataaaaacactgtgatgtttaaaaaaaaaa-gcaaag 742
Query: 544 caagttgctctgaagattttctctg 568
|||||||||||||||||||||||||
Sbjct: 743 caagttgctctgaagattttctctg 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 968
Length adjustment: 10
Effective length of query: 559
Effective length of database: 958
Effective search space: 535522
Effective search space used: 535522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
