BAC Information

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BAC

Clone NameMSMg01-119E16
Chromosome9 (Build37)
Map Location 94,313,459 - 94,313,805
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674371, LOC384967, EG384968
Downstream gene1190002N15Rik, EG667601, Slc9a9, Chst2, LOC667088
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119E16.T7 (MSMg01no119_e16.b1)MSMg01-119E16.TJ (MSMg01no119_e16.g1)
ACCAG329947AG329948
length710708
length of high quality
(start - end)
345 (325 - 669)523 (71 - 593)
definitionCHROMAT_FILE: MSMg01no119_e16.b1 PHD_FILE: MSMg01no119_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:23 2005CHROMAT_FILE: MSMg01no119_e16.g1 PHD_FILE: MSMg01no119_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGAGCGCGGAATTC
TTCTCAGTTACCATATTGCCCTGAGTCTAAGTTTTGACACTGATGTTGGA
GGGACACATACATTCAAATCATAGCAGCATTGCTCAAAATCAGGAAATAA
GCATGAGCTACAACTCCGCATATCCCCCAGTATTCCAAGTGCTATGAAGT
TTGCTTGCAAACGTTGACTATGAATGAGTTAATAACTTTTTTCATATGGG
TGTATGACTGGGACCTCTGATTCAAGATAACACACTCTGTGATCCCAAAG
CTATTAATAACAGCTCTTTTTGTTGTCGAGTACTGTGCAACCTCTGTTTA
CACTGGGCACAGAAGCGCCATCTAGCTCTTACCCTATAAAGCAGTGTGGT
TCTCTAGATCTTCGCAGCCAATGAGCTAAATCCCAGTAGGAGGAAAACTC
ATGTCAGGTCGTACATGGAGCATGTTACAGGACTTATAATGGCACCTAGG
TCCTTGTACTCCATCCTGTGATTCCAACATTGGTGAGAGAAGACATAATA
TTTCCCACAGCACTGTGTGTGTGCGCGCGCGCGAGTGTTCGAGCATGTGT
GTGCATACAGAAAGTGAATATACCTTAAGTTGTAGCACCTACATATATTT
ATATAGTATAAAGGCCTGACATTGGGCGGTAGGGAGGTTGGTGGTGATCC
TTTTCCCCCT
TGCTCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTACCGCATTTTTAATT
GGGTTATTTGGTTTTAAGGAGATTAACTTCTTGATTTCTTCATATATTTT
GGATATTAGCCCTCTGTTGGATGTAGTGTTAGTGAAGAGTTTTTCCTGAT
CTGTAGGTTACCAATTTATCCTATTGACAGTATCCTTTGCCTTACAGAAG
CTTTCCAGTTTCATGAGGACCCACTTATCAATTGTTGAATTGTTGATCTT
AGAGCCTGAACCATTGTGTTCTCTTCAGGAAATTTCCCACCTGTGTCACT
GAGTTCAAGGCTCTTTCCTTCTTTCTCTTCTCTTAGATTCAGTGTATCTG
GTTTTATGTTGAGGTCCTTGATCCACTTAGACTTGAGCTTCTTGTAAAGC
GATAAATATGGGTCTATTTTCATTTTCCTACATACAGACTGTCAGACCGA
CACCGTTTACTAAAGATGATTTTTTTTCCATTGTATGTTTTGCCTTCTTT
GTCAAAGATCAAGTGTCCATAGGTATGTGGGTTTATTTTTGGGTCTTTGA
CTCTATTCCTTTAATTGATCTGCCTGTCTCTGCACCAATACCATGCATTC
TTTATTTATTTATTTACTTATTCTTTTTCCATCTTTTTTAGCGCATTTAT
CTTATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_e16.b1 MSMg01no119_e16.b1 CHROMAT_FILE:
MSMg01no119_e16.b1 PHD_FILE: MSMg01no119_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:23 2005
         (345 letters)



>mm_chr9_94313259_94314005
          Length = 747

 Score =  644 bits (333), Expect = 0.0
 Identities = 343/347 (98%), Gaps = 2/347 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcgagtactgtgcaacctctgtttacactgggcacagaagcgccatctagctcttaccc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 547 gtcgagtactgtgcaacctctgtttacactgggcacagaagcgtcatctagctcttaccc 488

                                                                       
Query: 61  tataaagcagtgtggttctctagatcttcgcagccaatgagctaaatcccagtaggagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tataaagcagtgtggttctctagatcttcgcagccaatgagctaaatcccagtaggagga 428

                                                                       
Query: 121 aaactcatgtcaggtcgtacatggagcatgttacaggacttataatggcacctaggtcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aaactcatgtcaggtcgtacatggagcatgttacaggacttataatggcacctaggtcct 368

                                                                       
Query: 181 tgtactccatcctgtgattccaacattggtgagagaagacataatatttcccacagcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgtactccatcctgtgattccaacattggtgagagaagacataatatttcccacagcact 308

                                                                       
Query: 241 gtgtgtgtgcgcgcg--cgcgagtgttcgagcatgtgtgtgcatacagaaagtgaatata 298
           ||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gtgtgtgtgtgcgcgtgcgcgagtgttcgagcatgtgtgtgcatacagaaagtgaatata 248

                                                          
Query: 299 ccttaagttgtagcacctacatatatttatatagtataaaggcctga 345
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ccttaagttgtagcacctacatatatttatatagtataaaggcctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 747
Length adjustment: 9
Effective length of query: 336
Effective length of database: 738
Effective search space:   247968
Effective search space used:   247968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)