BAC Information

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BAC

Clone NameMSMg01-119F17
Chromosome9 (Build37)
Map Location 79,066,192 - 79,066,456
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
Downstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119F17.T7 (MSMg01no119_f17.b1)MSMg01-119F17.TJ (MSMg01no119_f17.g1)
ACCAG329997AG329998
length716713
length of high quality
(start - end)
287 (77 - 363)247 (65 - 311)
definitionCHROMAT_FILE: MSMg01no119_f17.b1 PHD_FILE: MSMg01no119_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:28 2005CHROMAT_FILE: MSMg01no119_f17.g1 PHD_FILE: MSMg01no119_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAAGAGGCGCGGAA
TTCACTCAATCTCCGACCACACACACACACACACACACACACACACACTC
ACACACACACACACACACACACAAACACACACACACACACACACTCACAC
ACACCAGTTGCTTTTAGGCCATGATAAACAAGTAAACACAAGAATAATCA
CGCACTAGAGAAAAGGATTAAAAAAAAAGAAACTAAGCAAAAACAAGCTA
TAGATATCTGTTCTTAACCTGGTTTAAATGGATTCCCAACACTCTGGCCT
TCTCCTCAGTTGTGATCCATCTTTCAGCACAGAAATCGACGTTACCATTG
GCTGCTTTGATTCACGTATAGCTAGAAGAACGCTTGACCAGTAATGAGGA
ATGATAAGCCTGGAAGGTCAGTGTGAAATCATTTGGTAGGGCGATTGGTA
AGTTACCTGCCCTTTGGTAGCCAATTAGGGCACGAAGGAGACCCATGTCC
GTTTGTCAGCATGTACTATGAACCTACTGCACCAGGCTATTAGTTCCGTC
ACTTTAATTAATCCTCATAACCTCCTGACGCTTATGAACAATTACCCTAT
TCTTTATAAATGAATAAGCACATAGCGTTACACTTGTTAAAACATCTGCG
CTGGTAAATGTTCCAGTTGCCCCCTTTCGTTTCAAAGCTTCCCCCCCTTT
TACCCTGCCTCTCTTA
ATGCAGTGTTAGGCCTGGCGGCCGCCTGGTCCAAAAAGGGAGGTGACCTA
TAGAATTTCCCCGAAATTCTCAGGGCTGGAGAGATGTCTCAGAGGTTAGA
AGCACTGACTACTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCATA
TGGTGGCTCACAACCATCTGTAATGGGATTTGATGCCCTCTTTTAGTGTG
TCTGAAGATAGTGACAGAGTACTCACATAACATTAAATAAATAAATCTTT
AAAAAAGAATTCTCTATTATTTTAATATTCTTACATTAAAAAAAAACTGA
AACTCAGTTGACTCCTTAGTGGAAGTCAACTATTTTAATTTTAAATTCAA
TGGTTTTTAGTTTACTATTTTTTTCTTGCTTATATGGAAAACTTAATAAT
TTAAGATATAAATTTTCTGTAAGAGTTTAGAAGTTTGTCAACATTGTAGT
CATGAGGGTCACTTTGAAAAGGTCTCCCAAGTACAGCTATGGAGCAAATA
GATGCTTTAATACTTCTTATAACAAAGGAATGGAGATGCTTCTTTGCCTC
CTCTATCTTTATGGTCACACCCACGCCTTCAAACCTCTGGTCTAGTTCAT
CCCAATTAATATCATATTTGCTACTTCAATTAACAAATGTATTACAACAG
ATATAAAGCCTTTTGGAAAGAATTGATAGTTATTCCTGTATAATATATAC
AATGATCTTAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_f17.b1 MSMg01no119_f17.b1 CHROMAT_FILE:
MSMg01no119_f17.b1 PHD_FILE: MSMg01no119_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:28 2005
         (287 letters)



>mm_chr9_79065969_79066656
          Length = 688

 Score =  437 bits (226), Expect = e-127
 Identities = 256/266 (96%), Gaps = 2/266 (0%)
 Strand = Plus / Plus

                                                                       
Query: 23  tcacacacacacacacacacacacaaacacacacacacacacacactcacacacaccagt 82
           ||||| || |||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 224 tcacagac-cacacacacacacacacacacacacacacacacacacacacacacaccagt 282

                                                                       
Query: 83  tgcttttaggccatgataaacaagtaaacacaagaataatcacgcactagagaaaaggat 142
           ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 283 tgcttttaggccatgataaacaagtaaacacaaaaataatcaagcactagagaaaaggat 342

                                                                       
Query: 143 t-aaaaaaaaagaaactaagcaaaaacaagctatagatatctgttcttaacctggtttaa 201
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 taaaaaaaaaagaaactaagcaaaaacaagctatagatatctgttcttaacctggtttaa 402

                                                                       
Query: 202 atggattcccaacactctggccttctcctcagttgtgatccatctttcagcacagaaatc 261
           |||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||
Sbjct: 403 atggattcccaacactctggccttctcctcagctgtgatccatcactcagcacagaaatc 462

                                     
Query: 262 gacgttaccattggctgctttgattc 287
           ||||||||||||||||||||||||||
Sbjct: 463 gacgttaccattggctgctttgattc 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)