BAC Information

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BAC

Clone NameMSMg01-119P01
Chromosome9 (Build37)
Map Location 37,580,641 - 37,581,164
singlet/doubletsinglet
Overlap geneOlfr875
Upstream geneEi24, LOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874
Downstream geneOlfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119P01.T7 (MSMg01no119_p01.b1)MSMg01-119P01.TJ (MSMg01no119_p01.g1)
ACCAG330435AG330436
length681710
length of high quality
(start - end)
371 (45 - 415)524 (74 - 597)
definitionCHROMAT_FILE: MSMg01no119_p01.b1 PHD_FILE: MSMg01no119_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:13 2005CHROMAT_FILE: MSMg01no119_p01.g1 PHD_FILE: MSMg01no119_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:13 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAACTCTTCCGCTGGGGAACGGTGGTAATGAAGTGTTCCCGCAAA
ACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCTTCAGCTG
GGGAACAGGGTACCCGTAAGTATAGCTTTACAAGGTAAGTCTGATCTTGA
ACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAG
CTTTACAAGGTACGTCTGGCCTTGAACTTTCTAACGAAATTCAAGACAGT
CTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTATGTTTGGCCTTGA
ACTTTCTCTAGTGTTAGGAGCCCTTTTGTTCCTTTTCACATGTTATCAAG
TGGTTAAGGCAGGGCTGACAATTCTGGATGAGATTCAGGGCAATCCATCA
GAAGTAAAGCGGGGAGAGAGAGTAGGAGCCAAGAGGAAATATGGTACACA
AAATAAGTATACAGGGCCTTTCCCCCGGTTCTTGGACCCCGAGGAAAAAT
TTTTAAGGCCCTGTTAAAAAATACTTTGGGACAAATTTGTGCTGCCCGGC
ACACTTATACATTTCGCACCTTGTCTCTTTCCGGGGGGCGTTTTTTTTTA
AAAGGACCCCTAATTTCTCCCCTCTAGATGG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTACCCAAGGTTTTCCTCAGAGCAA
CTTTGACATCTTTATTTCTCAAGCTATAGATCAGAGGGTTCAACATGGGC
ACCACAATCGTATAAAACAAGGAAGACACTTTTCCTTGGTCAAGGGGCAA
AATGGAAGGAGGTTTGAGGTACATGAAGGCCCCAGAACCAAAGAAAAGAC
AAACCACAATCAAGTGGGAGCTGCAGGTGCTAAAGGCCTTAGACCTGCCC
TCTGTGGAATGCATGTGAAGAATGCTAGAGAGGATGAGGGCATAAGAAAT
GAAGATGGTGACAATGGGCACACCAATACCAAATGCCACAACAATGAAAA
CTACAAGCTCATTTGTGAAGGTGTTGCTACAGGAGAGCTCAAGAAGGGGA
AGAATGTCACACATGAAGTGATTGATGAGGTTGTCAGCACAGAAGGTCAG
ATTCATGAGGTTCCCTGTATGGGCTATGCCTCCAGAGAAACCCATTACAT
AGACTCCCAGTAAAAGAAGTAAATATACCTGGGGAGACATGGTGACCGTG
TACATCAGGGGGTTACAGATCGCAACATAACGGTCATATGCCATGGCTGA
CAGAATGAAGGACTCAGAGAAAACAAAGAAACAGAAGAAAAACAACTGTG
TCATGCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_p01.g1 MSMg01no119_p01.g1 CHROMAT_FILE:
MSMg01no119_p01.g1 PHD_FILE: MSMg01no119_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:13 2005
         (524 letters)



>mm_chr9_37580441_37581364
          Length = 924

 Score =  946 bits (489), Expect = 0.0
 Identities = 516/525 (98%), Gaps = 2/525 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttacccaaggttttcctcagagcaactttgacatctttatttctcaagctatagatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tcttacccaaggttttcctcagagcaactttgacatctttatttctcaagctatagatca 665

                                                                       
Query: 61  gagggttcaacatgggcaccacaatcgtataaaacaaggaagacacttttccttggtcaa 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 664 gagggttcaacatgggcaccacaattgtataaaacaaggaagacacttttccttggtcaa 605

                                                                       
Query: 121 ggggcaaaatggaaggaggtttgaggtacatgaaggccccagaaccaaagaaaagacaaa 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 604 ggggcaaaatggaaggaggtttgaggtacatgaaagccccagaaccaaagaaaagacaaa 545

                                                                       
Query: 181 ccacaatcaagtgggagctgcaggtgct-aaaggccttagacctgccctctgtggaatgc 239
           |||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||
Sbjct: 544 ccacaatcaagtgggagctgcaggtgctgaaa-gccttggacctgccctctgtggaatgc 486

                                                                       
Query: 240 atgtgaagaatgctagagaggatgagggcataagaaatgaagatggtgacaatgggcaca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atgtgaagaatgctagagaggatgagggcataagaaatgaagatggtgacaatgggcaca 426

                                                                       
Query: 300 ccaataccaaatgccacaacaatgaaaactacaagctcatttgtgaaggtgttgctacag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ccaataccaaatgccacaacaatgaaaactacaagctcatttgtgaaggtgttgctacag 366

                                                                       
Query: 360 gagagctcaagaaggggaagaatgtcacacatgaagtgattgatgaggttgtcagcacag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gagagctcaagaaggggaagaatgtcacacatgaagtgattgatgaggttgtcagcacag 306

                                                                       
Query: 420 aaggtcagattcatgaggttccctgtatgggctatgcctccagagaaacccattacatag 479
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 305 aaggtcagattcatgaggttccctgtatgggctatgcctccagagaagcccatcacatag 246

                                                        
Query: 480 actcccagtaaaagaagtaaatatacctggggagacatggtgacc 524
           |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 245 actcccagcaaaagaagtaaacatacctggggagacatggtgacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)