BAC Information

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BAC

Clone NameMSMg01-120L05
Chromosome9 (Build37)
Map Location 46,855,762 - 46,855,922
singlet/doubletsinglet
Overlap genenone
Upstream geneBC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722, EG667890, 2900052N01Rik, D930036J05
Downstream geneCadm1, LOC100043303
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120L05.T7 (MSMg01no120_l05.b1)MSMg01-120L05.TJ (MSMg01no120_l05.g1)
ACCAG331002AG331003
length722745
length of high quality
(start - end)
159 (73 - 231)86 (73 - 158)
definitionCHROMAT_FILE: MSMg01no120_l05.b1 PHD_FILE: MSMg01no120_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:14 2005CHROMAT_FILE: MSMg01no120_l05.g1 PHD_FILE: MSMg01no120_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAAAGAGGATCCGCG
GAATTCTTTTTTCTTTGCTACTGGTCTTGTTCTTTTCTAAGTGATGGAAT
GGGCTTTCTCCATAGTCCAGCTATGGTCCCAGGTCTCCAATAGGCCCTAT
TTCTCCTTTGGTTTCCCTGCCAGGATCTCAGACTTTTTCTGTCACACAGT
AAATCAATGTATCTGTAGAGCTTCTGACAAAGTGGTTTGGAAAAAGTCAG
ACACTGAAAGATTATTGGCCAGCCTCGAACAGGAGTGTACTTATCACCAC
AAACCATCTCCCAAATGTTATTTATAGAGAACAATTCCTTTTATGTAAAC
CTCATGTTATACATTACAATATCTGCATGCCAAGTAGGAGACAGCAATAT
CCACTCCCATAGGCCCTAGTGCTAATAAAGCATTTAATGGATTGACTGTC
CCCATGATGTCACCCATCTTTCTAAGCTCGAGCTTCTTATTTTTTGAAGA
TGTCAATGGCTATACGCTGTATGCTGGATTCATTGATGATCCAGCCATGT
GATCCTCCAAGCTAGCTTTCGGCAATCATTTCTTATTTGATATCTTTCTT
CTTGGTCCAAACCTTGTAGGGGCAGGATTCTCCTCCAGAAACTCTGTCCC
CGACAAAATCTGACTCCTCGTAACAATTTGGAAAGTTCCCTTTTTGCATC
ATATATTCCTAGCATTCCCACA
CAATGACAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCCCGCGAAATTCTCTTCTTTTCTGACATGGGCATTTA
GTGGTATTAATTTGCCTGTAGGTAATTCTGCAGCCCTGTATCTCAGTTTT
ATCTTATTTTAGCTCAGAATGTTTTGGCTTTCTTTTTTGTCTCTTCTTTG
ACTCACAGGCTATTAAGAAGTATGCTTTCTAGCGTCTTGATATTTTATAA
TTTCCTAAATATTTTTCTTTTTTTGATTTCAAATTTGCTTCCAGTTTATT
CCAAGAACATACATGCCATATTCTTTAACTCTTTAAAATCTTCCAAAGAT
GTGGTCCGAAAGATATATCCCTATTTCGACTTATGACTGATATTCATTCT
GCGGCTACTTATATTCATATAACCTTGTTTTTTTGCGTATGCTACGTGCA
TTTGACCAAATTTTTTTTTCCTGTTGGATAAAATTTCCTACTTATAATCT
TGACAAACCTCTGTATACTCTCAATTTATTCTTCTGAATCATTTCATGAT
TATCTGTTATTTGTTTCACGCCCTGTTACTTTTGATCCTACTTGAATCTT
CCCAGCATTTTTTGTTGAATTTGGTTTATTTCTTCATTTCTCATTTCTAC
TCCATACTATCGCCTCCCTTGGAATTTCCTTCCTCTTCTTTTTTATTGCT
CCGGCACCCACAACTCCTTATATTTTGCACCCCACCCTCATCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_l05.b1 MSMg01no120_l05.b1 CHROMAT_FILE:
MSMg01no120_l05.b1 PHD_FILE: MSMg01no120_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:14 2005
         (159 letters)



>mm_chr9_46855562_46856122
          Length = 561

 Score =  261 bits (135), Expect = 1e-74
 Identities = 154/161 (95%), Gaps = 2/161 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtcttgttcttttctaagtgatggaatgggctttctccatagtccagctatggtcccag 60
           ||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 201 ggtcttgtttttttctaagtgatggaatggtctttctccagagtccagctatggtcccag 260

                                                                       
Query: 61  gtctccaataggccctatttctcctttggtttccctgccaggatctcagacttttt--ct 118
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||
Sbjct: 261 gtctccaataggccctatttctcctttggtttccatgccaggatctcagactttttttct 320

                                                    
Query: 119 gtcacacagtaaatcaatgtatctgtagagcttctgacaaa 159
           ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 gtcacacagtaaatcaatgcatctgtagagcttctgacaaa 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 561
Length adjustment: 8
Effective length of query: 151
Effective length of database: 553
Effective search space:    83503
Effective search space used:    83503
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)