Query= MSMg01no120_n19.b1 MSMg01no120_n19.b1 CHROMAT_FILE:
MSMg01no120_n19.b1 PHD_FILE: MSMg01no120_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:27 2005
(522 letters)
>mm_chr9_57680045_57680966
Length = 922
Score = 886 bits (458), Expect = 0.0
Identities = 492/522 (94%), Gaps = 29/522 (5%)
Strand = Plus / Minus
Query: 1 ctgtatactgagttccaggccagcccgggctttatagtgagatcttgtctaaaagaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ctgtatactgagttccaggccagcccgggctttatagtgagatcttgtct---------- 730
Query: 61 aaataaaaaaaaaaaaaaaaaaagaatttaaataatgaagttcatggttctaattagttt 120
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 -------------------aaaagaatttaaataatgaagttcatggttctaattagttt 689
Query: 121 tctagaaagatatttctctaagagtttcttagctccaagcaaacccaatatcatgttctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tctagaaagatatttctctaagagtttcttagctccaagcaaacccaatatcatgttctt 629
Query: 181 ttgttgttttgaagttgaagataacagtttaagcactttatgcgtatttctcaagagcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttgttgttttgaagttgaagataacagtttaagcactttatgcgtatttctcaagagcct 569
Query: 241 tacagacgtgattttgttttatctttacattatctgattagaaagagggaagggagatcc 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tacagacgtgactttgttttatctttacattatctgattagaaagagggaagggagatcc 509
Query: 301 cagaatttcctttgtacccaaagaaagttaaaattagttccaaacctgattgcatatcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cagaatttcctttgtacccaaagaaagttaaaattagttccaaacctgattgcatatcag 449
Query: 361 cgtcagttgtggggagtttactagtttcttcaggagggtagggctagaggtgctagggac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cgtcagttgtggggagtttactagtttcttcaggagggtagggctagaggtgctagggac 389
Query: 421 gagggcctccagcttgctagtaggacgctttttatataggtggacagtggagtccttata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gagggcctccagcttgctagtaggacgctttttatataggtggacagtggagtccttata 329
Query: 481 gtgaatcattttggagggtggagcctgtggaatctcttctca 522
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gtgaatcattttggagggtggagcctgtggaatctcttctca 287
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_n19.g1 MSMg01no120_n19.g1 CHROMAT_FILE:
MSMg01no120_n19.g1 PHD_FILE: MSMg01no120_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:27 2005
(531 letters)
>mm_chr9_57503001_57503930
Length = 930
Score = 951 bits (492), Expect = 0.0
Identities = 522/532 (98%), Gaps = 3/532 (0%)
Strand = Plus / Plus
Query: 1 catggagatctacctgcctctacttcccaaatgctggaatcaaaggcatgtgccacctca 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 catggagatctaccggcctctacttcccaaatgctggaatcaaaggcatgtgccacctca 259
Query: 61 ttcatctccttcataaattattatttaaaaaa-atatatatacatgcctgtagtccagca 119
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 260 ttcatctccttcataaattattattaaaaaaatatatatatacatgcctgtagtccagca 319
Query: 120 ctaaggagacagaagtaggaagagcaggattcaaagttattatcagctacatatagtaag 179
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctaaggagacagaagtaggaagaacaggattcaaagttattatcagctacatatagtaag 379
Query: 180 taggaggccagcctgggctacataagcctgtcacaacaagtgaacaaaactaaaagcaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taggaggccagcctgggctacataagcctgtcacaacaagtgaacaaaactaaaagcaag 439
Query: 240 gcaagttattattataccagcacaattaatgataatattattaatgttttgactctgcac 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 440 gcaagtgattattataccagcacaattaatgataatattattaatgttttgactctg-ac 498
Query: 300 tctgattctgtagccccagacatcagagtttgctctggctagcaaatttgtggcaatcct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tctgattctgtagccccagacatcagagtttgctctggctagcaaatttgtggcaatcct 558
Query: 360 cctgcctcaccctctcaactgatgggattacacttcaaggggagacgatagaattacgcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cctgcctcaccctctcaactgatgggattacacttcaaggggagacgatagaattacgcc 618
Query: 420 actgttatgctgccctcacatttctcctgatttctcttagaattatgtttgtctctgata 479
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 attgttacgctgccctcacatttctcctgatttctcttagaattatgtttgtctctgata 678
Query: 480 atgagatagccactagtctcatcagatccgagaggcaacagccgccctctgg 531
|||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 679 atgagacagccactagtctcatcagatccgagaggcaacagc-gccctctgg 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 930
Length adjustment: 10
Effective length of query: 521
Effective length of database: 920
Effective search space: 479320
Effective search space used: 479320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
