BAC Information

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BAC

Clone NameMSMg01-121H23
Chromosome9 (Build37)
Map Location 116,324,204 - 116,324,318
singlet/doubletsinglet
Overlap genenone
Upstream geneEG546164, Gadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream geneRbms3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121H23.T7 (MSMg01no121_h23.b1)MSMg01-121H23.TJ (MSMg01no121_h23.g1)
ACCAG331597AG331598
length713700
length of high quality
(start - end)
---115 (70 - 184)
definitionCHROMAT_FILE: MSMg01no121_h23.b1 PHD_FILE: MSMg01no121_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:17 2005CHROMAT_FILE: MSMg01no121_h23.g1 PHD_FILE: MSMg01no121_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTCGCCGCGCTATACGACTCCTATTTTCAGAGCGATCCGCGGAATTCT
ACGCGTTTCCGACCTCATAACTCTAGACCTGTAGCAAATACCCCAACAAA
CCAAAACTAGTAAACTCCAAATCAATAAACACAAACAAACTCTATACCCT
AACTCCATCACCCACAACGCAAGCCAGGTTAATGCAGCAGTACATAAGTA
CCTATCTAAACCGTTCAATCCATGCCAGACCGAGCACTTATTCACGGCTG
TCACGAGGTAAAATTCTTGGGCTAGGTAAACCACGCCCCTAACCTCATTG
AGCTAACTGCACCTTTACCTCTCTTATCCCTTCTAATTACAACTCTGTTG
AGCATTTATTATTACTACCCTCCCCTTTAGAGACACCTACACCGGGCGGA
ACAACTTGCCTGATCTCGCGCCTGTCCGTTTGCTACCTTTGACCGCTCCA
CCTGTACCACGTTGCCCCGCCCTTACCGCGCCAATCATAGGGATGCCCGC
GCCCCAGATGGGGCCACCTGGTCACGATCCATCCCCCGGGCCCCCCCGAC
TTCTAACACACTAATGTCACCCCGCTCTGACTATCCCCCCCCGCCCCCTC
GCGCTTTCCCCACCTTCCCGTGTTCGCGGTCCTCCCTCGCCCCCCCTTTC
TTCGTCACATTGTTTTTTCGCACACCCCCCGCGCCCCATCCGCCCCCCCT
CTACTATTTCTGC
GATTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTTCGTGAATGTGTCTCCTGTGTCCCTTA
ACAGCTTCTATGTGCCCCCGAGGTTCATAGAAATTCAGGGTTCCTCCCCT
CCCAATTGTCCTGAGAGTTACTTGCACTGGAGTTTGGGTCTTGACAATAT
TCCCCAGAAGATGCCCCAGAAGGGCTGAGGTAAAGAATGTCTGCTTTTAT
TTAGTGTTGCATTTCTCAACCTGTGAGTTGAGACCCCTTGGGGGCTGAAA
GACCTTTTCACAGGGTCTCCTTAGACCATCCGAATTCACAGATATTTGTG
TTAAGATTCTTTTCACTCGCCCACTTACCGTTATAAATTAGTCGCGTTTT
TAATTTTGTGGTTGGGGTCACCACAACATGAATTAAAGGGTCACAGCATT
ACGATGGTTGAAACCCTCCTGTAAAGCAAGACAGAGGTCTTTTGCTATGT
TTGTGCTCTTATAATTTCATCTCCTCTGTATAGTAGAGGAGTTTCTAGCG
TGATCTCAACGCTGAGTCCTTCTATCCCAATTCACTATCCAGCTGTGTTT
TATCCTCTTTGTTATGTGGGGTGATTATTATCGTCTTAACGCATGTATAT
GACCCATGTGTGTTGTTCGTTGCCTTTGCTGTTTCGACCCCAATCTCTGT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_h23.g1 MSMg01no121_h23.g1 CHROMAT_FILE:
MSMg01no121_h23.g1 PHD_FILE: MSMg01no121_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:17 2005
         (115 letters)



>mm_chr9_116324004_116324518
          Length = 515

 Score =  180 bits (93), Expect = 2e-50
 Identities = 110/119 (92%), Gaps = 8/119 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttttcgtgaatgtgtctcctgtgtcccttaacagcttct--atgtgcccc--cgaggtt 56
           ||||||||||||||||||||||||||||||||||||||||  ||||    |  |||||||
Sbjct: 315 cttttcgtgaatgtgtctcctgtgtcccttaacagcttctaaatgt----caacgaggtt 260

                                                                      
Query: 57  catagaaattcagggttcctcccctcccaattgtcctgagagttacttgcactggagtt 115
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 259 catagaaattcagggttcctcccctcccaattgtcctgagagttacttggactggagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 515
Length adjustment: 8
Effective length of query: 107
Effective length of database: 507
Effective search space:    54249
Effective search space used:    54249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)