BAC Information

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BAC

Clone NameMSMg01-121L12
Chromosome9 (Build37)
Map Location 72,790,677 - 72,790,960
singlet/doubletsinglet
Overlap genePygo1
Upstream geneTcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694
Downstream geneDyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081, Unc13c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121L12.T7 (MSMg01no121_l12.b1)MSMg01-121L12.TJ (MSMg01no121_l12.g1)
ACCAG331761AG331762
length719725
length of high quality
(start - end)
284 (72 - 355)237 (70 - 306)
definitionCHROMAT_FILE: MSMg01no121_l12.b1 PHD_FILE: MSMg01no121_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:35 2005CHROMAT_FILE: MSMg01no121_l12.g1 PHD_FILE: MSMg01no121_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTTTTCCCCAACATCTCAGGTGGCTCAAAACTTCCTGTAACTTT
AGGCCTCCTGGAGTACCTGAACACGTATGCACATAAACACTTGCTTTAAA
ACAAACAAACAACCACAACAAAACACCAGATCTTAAAAATAATAATACTT
TTAAAAAATGTCAACTTACCTGTGTGTTGGCCTTGCGTTTTTTCTTATCT
GGGCTTCCGAGTTGTATATTGGGCCCTCCTAACCCATCCAGTCCACTGTC
ACCACCTACAAAAAATTTTTTCCCATAATATTCCCACTTGGAGGTGAAAC
TGCTTCATTTATCTCACCTTCGCCCACCCGATTAAGGTATGAGGATATAA
GGACAGGGACAATTACAGGCACAGGAAACTGTAAGGAGCCCTTCCCCTAG
GAATCTAGCATACCAGTTGCTGAAGGCCGGTTTCCTCCCCAGCAGCGAAC
CTGTAGCTCTCGGGTACTCAACCCCTCATCACAGTACAATTTCACCCAGT
GCATCTCTGGAGCATCCTATAACTTCACTTATCACTTGACAAAGACCAAG
GATGAACTAAAACGGCTACTTTCAGACTTTTGAGACTCACCTTTCTGTAA
AGCCCTGTTTGTTCTGTCAACTCCCTCTGCAAACCACGTTGGTCCCACAA
TTTTTAAATTCTCGCTGCC
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAACCCTGGAAGGAGGAACTATTTCCCAGGAG
TGGCTCAGGAAAGCCAAATCCTCAAGCTCAGAGTTTGATGGAGAGACCCT
GTTTCAGGGACTGAGGTGGGAGAGTGAAGATGATTCCAGATGTCAGCCTC
TGGCCTGCAGGTGCATGCGTGGACGTATGTGCCCACACATGAAAAAAATA
TGCACATACACCTGTATACATTATACACCTAAGAACAAGAGAAAAAAGAA
TAATCAAAATACAACCAAGTTGTCTTCAAGCTTGTAATCCTCCTACCTCA
GTCTGGAGTGTGTGTCACCCCACCCCACCAGCTTTTGTTTTGGTTTGTTT
TTTTAAAGATATATGGCTTAATTAAATAAACTTTACACTAAGGGAATTTA
ATTTACACACTTTCCTCTGTAAAGATGAGATAATAGCCCTCAGCAAATGT
CTGTAAACACAAGGTTCTATTTGTCTACTTTTGCCCTGCGCATGGCGCTT
GGAACGTTTGTGCCCGCTGTTTACACACTCTTTCCCCGACCTGCTTCTTC
CGCTTCATGTACAGGCTCTACCGGTATCTCTCCGCCTCCAACTCTCTGCC
TCTGACCTTCTCCCTTACTCTTTTCTATCCCCCTCCTTTCGCCCCCGTTC
CCATCCCCGCCTCTCCCACAATCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_l12.b1 MSMg01no121_l12.b1 CHROMAT_FILE:
MSMg01no121_l12.b1 PHD_FILE: MSMg01no121_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:35 2005
         (284 letters)



>mm_chr9_72790477_72791160
          Length = 684

 Score =  487 bits (252), Expect = e-142
 Identities = 276/284 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaggtggctcaaaacttcctgtaactttaggcctcctggagtacctgaacacgtatgca 60
           |||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 484 tcaggtggctcacaactgcctgtaacttcaggcctcctggagtacctgaacacgtatgca 425

                                                                       
Query: 61  cataaacacttgctttaaaacaaacaaacaaccacaacaaaacaccagatcttaaaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cataaacacttgctttaaaacaaacaaacaaccacaacaaaacaccagatcttaaaaata 365

                                                                       
Query: 121 ataatacttttaaaaaatgtcaacttacctgtgtgttggccttgcgttttttcttatctg 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 acaatacttttaaaaaatgtcaacttacctgtgtgttggccttgcgttttttcttatctg 305

                                                                       
Query: 181 ggcttccgagttgtatattgggccctcctaacccatccagtccactgtcaccacctacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ggcttccgagttgtatattgggccctcctaacccatccagtccactgtcaccacctacaa 245

                                                       
Query: 241 aaaattttttcccataatattcccacttggaggtgaaactgctt 284
           |||| |   |||||||||||||||||||||||||||||||||||
Sbjct: 244 aaaagtaaatcccataatattcccacttggaggtgaaactgctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)