BAC Information

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BAC

Clone NameMSMg01-122A06
Chromosome9 (Build37)
Map Location 26,972,858 - 26,973,628
singlet/doubletsinglet
Overlap genenone
Upstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3
Downstream geneIgsf9b, Spata19, LOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122A06.T7 (MSMg01no122_a06.b1)MSMg01-122A06.TJ (MSMg01no122_a06.g1)
ACCAG331985AG331986
length1,0401,073
length of high quality
(start - end)		762 (44 - 805)772 (84 - 855)
definitionCHROMAT_FILE: MSMg01no122_a06.b1 PHD_FILE: MSMg01no122_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:00 2005CHROMAT_FILE: MSMg01no122_a06.g1 PHD_FILE: MSMg01no122_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCTCAGTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTTTTCTAGTCCACTCTACTTGGTGTTCTGTAAGCTTTTTGTACAT
TGATAGGACTCTCTTTTTTTAGGTTAGGGAAATTTTCTTCTGATTTTGTT
GAAGATGTTTTCTGGGCCTTCAAACTGAGAGTCTTCTCCTTTTTTTAGTC
CTATTATTCTTTGGTGTGGTCTTTTCATAGTGTCCTGGATGTTTTGTGTT
AGAAATCTTTAGCTATTCTTTGACAGATGTATAAATTTCTTCTATTATAT
CTTCTATACCTGAGATTCTATCTTTCATCTCTTGTATTCTGTTGGCGATG
CTTGTGTCTGCATTTCCTGATCTCTTTCCTAGGTTTTCTATCTCCAGGAT
TGCCTTAAGTTTTTCTTTATTGCTTCTATTTTCATTTTCAGGTCTTAAAG
CATTATGTTCACTTCCTTCACCTGTTTGATTGTATTTTCTTGTATTTCTT
TATACTTATTCATTTCCTCTTTAAGGACCTCTACCTATTTGATTGTATGT
TCCTGTATCTCTTTAAGAGATTTATTCATTTCCTCTTTAAAGCCCTCTAT
CATCTCCATAAGAATAGATTTAAGATCATTTTCTTTCGATTCAGGTGTGT
TAGGATATTCAGGTCTTGTTGTATGTAGTAGGATAGCTGGGTTCTGATGG
TGCCATATTGGTCTGGCTTTTGTATCTAGGGATACAGGTTGACTTCATGG
TCCCTGATAGCTGCAGTCTTCTGTTTGTTCTGGGCAGCAGCAGGCCTCCA
GGCATTCAGTCAGAGTTGTGGTCCTAGAAATGGAGTGCAGAGGGGTCAGG
GCAGAAGTTGATGGTTCTGGGTTTTGCCAGGGGGCTGACCAGGCAGGGAA
TTGGGTAAGTGTGCTAGTAATCGCTGATGTCTGCAGGCATCTGGGATGGC
GGTTATAGGGGTGGAACCAAAAAATGGATCCCGGAAGGGTATTGGAAAAA
CCTTCCCTTTTATTGGGCCTGGCCATGTTACCCCTCCAGG

TATTCTTNNNTAAGAGTGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTTAATCCATTGTTCTGGTCAGAAAA
TGAGATATAATTACAATTAACACTTCAGTATTTGTTGAGAGTGATTTTAT
GTCTTACTAATATTCACCCTTAAATGTGTTTGATGTAATTAGAAAACGAG
GTATATTCTTGATAGTTGGGTATAGGGATATAAATAAATATCCATTCAGT
TAAATTTATCTATTACTCTCCCCCAAGCTCCAATATCTTCATGGAGTTAC
TCTTTCTGGAAAAGTACAGTTCAGTCAAAATTCCTTTTACTTTTAACTAA
GTGGTATACATGGTATACACCAGAGAACTGAGCCATTATGGTGATGTCTG
AAAATATGAGGCCTCCACTCTTACAGCCTCCCTCTTTCACCTCCTTTTAG
CTCAAGGACAAACCCCTCCCCCATCCTCAAGCTCCAGAGAGTCTGAGCTG
CTCTCCCAAATAGCTGTTAAAGTATTTTTTTCCCAAACACATACAATCCT
CTCAGTGAACAAAATCATGACAAATGGACTGTGTCCTGTGATATGTGTCC
ACGTTAGATTTACGATTTCTGTAGCATCTCTTCCAACAAGAGCAACAGCT
CAGTGTAAGCACTACTTCCTGTACCACACCCCACATCTACAGCATGTTGC
TCCTTAAACACTTTTGAAGCCTAAATAAAGAGACTCATACTCACACACTG
GAGCTATAAATGACCAAAGAATCTGAAGAATAAAGGAATATCTATCCAGG
TGCAGTGACACATGCCTTTAAAAAGTAAGCACACCAAGGACAAAAAACAG
GGAGAGCTCTTTAAATTTGAAGCCAGCCTAGTCTACATATCATCAAAAAA
GACCCAGGCCAGGAACAACTGCTTAGGAATACCCTATCTTTAGGAAATGA
TAAGTAAGTGAATGCCTTTCATGCTGGAGAATGCTGGGAGAACATTTTTT
TTCCCTGAAAAATGGAAAAAATACCCTAACAGGTTTTGCCCCTTTTAAGG
GCCTCTTGGTGGTAAGTGGAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_a06.g1 MSMg01no122_a06.g1 CHROMAT_FILE:
MSMg01no122_a06.g1 PHD_FILE: MSMg01no122_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:00 2005
         (772 letters)



>mm_chr9_26972658_26973828
          Length = 1171

 Score = 1400 bits (724), Expect = 0.0
 Identities = 760/772 (98%), Gaps = 1/772 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgttctggtcagaaaatgagatataattacaattaacacttcagtatttgttgagagtg 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 ttgttctggtcagaaaatgagatataattaaaattaacacttcagtatttgttgagagtg 260

                                                                       
Query: 61  attttatgtcttactaatattcacccttaaatgtgtttgatgtaattagaaaacgaggta 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 261 attttatgtcttactaatattcacccttaaatgtgcttgatgtaattagaaaatgaggta 320

                                                                       
Query: 121 tattcttgatagttgggtatagggatataaataaatatccattcagttaaatttatctat 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattcttgatagttgggtatagggatataaataaatatccattcagttaaatttatctat 380

                                                                       
Query: 181 tactctcccccaagctccaatatcttcatggagttactctttctggaaaagtacagttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 tactctcccccaagctccaatatcttcatggagttactctttctggaaatgtacagttca 440

                                                                       
Query: 241 gtcaaaattccttttacttttaactaagtggtatacatggtatacaccagagaactgagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcaaaattccttttacttttaactaagtggtatacatggtatacaccagagaactgagc 500

                                                                       
Query: 301 cattatggtgatgtctgaaaatatgaggcctccactcttacagcctccctctttcacctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cattatggtgatgtctgaaaatatgaggcctccactcttacagcctccctctttcacctc 560

                                                                       
Query: 361 cttttagctcaaggacaaacccctcccccatcctcaagctccagagagtctgagctgctc 420
           ||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 cttttagctcaagaacaatcccctcccccattctcaagctccagagagtctgagctgctc 620

                                                                       
Query: 421 tcccaaatagctgttaaagtatttttttcccaaacacatacaatcctctcagtgaacaaa 480
           |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 tcccaaatggctgttaaagtatttttt-cccaaacacatacaatcctctcagtgaacaaa 679

                                                                       
Query: 481 atcatgacaaatggactgtgtcctgtgatatgtgtccacgttagatttacgatttctgta 540
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 680 atcatgacaaatggactgtgtcctgtgatgtgtgtccacgttagatttacgatttccgta 739

                                                                       
Query: 541 gcatctcttccaacaagagcaacagctcagtgtaagcactacttcctgtaccacacccca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gcatctcttccaacaagagcaacagctcagtgtaagcactacttcctgtaccacacccca 799

                                                                       
Query: 601 catctacagcatgttgctccttaaacacttttgaagcctaaataaagagactcatactca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 catctacagcatgttgctccttaaacacttttgaagcctaaataaagagactcatactca 859

                                                                       
Query: 661 cacactggagctataaatgaccaaagaatctgaagaataaaggaatatctatccaggtgc 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 cacactggagctataaatgaccaaagaatctgaagaataaaggaatatctatccaggtgc 919

                                                               
Query: 721 agtgacacatgcctttaaaaagtaagcacaccaaggacaaaaaacagggaga 772
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 agtgacacatgcctttaaaaagtaagcacaccaaggacaaaaaacagggaga 971


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 772
Length of database: 1171
Length adjustment: 10
Effective length of query: 762
Effective length of database: 1161
Effective search space:   884682
Effective search space used:   884682
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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