BAC Information

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BAC

Clone NameMSMg01-122B22
Chromosome9 (Build37)
Map Location 91,743,807 - 91,744,342
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434428, LOC621576, Zic1, Zic4
Downstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122B22.T7 (MSMg01no122_b22.b1)MSMg01-122B22.TJ (MSMg01no122_b22.g1)
ACCAG332062AG332063
length1,1621,151
length of high quality
(start - end)		705 (39 - 743)729 (88 - 816)
definitionCHROMAT_FILE: MSMg01no122_b22.b1 PHD_FILE: MSMg01no122_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:14 2005CHROMAT_FILE: MSMg01no122_b22.g1 PHD_FILE: MSMg01no122_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGATTTTATNNNAAGCAGTGGGCGCTATAGACTCCTAAGGGAGAGGATCC
GCGGAATTCCTGATCTTTCCAAACTTTTATCATGAATGGGTGTTGGATCT
TGTCAAATGCTTTCTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCT
TTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAA
CCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTG
CTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTT
GCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGG
GTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGATT
TGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAATT
GGAATTAGATCTTCTTTGAAGGTCTGGTAGAACTCTGCACTAAACCCATC
TGGTCCTGGGCTTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATT
TCTTTAGGTGATATGGGACTGTTTAGATGGTCAACTTGATCCTGATTCAA
CTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTT
CCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGG
ATTTCTTCAGGATCTGTTGTTATGTCTCCCTTTTCATTTCTGATTTTTGT
TAATTAGCATTTTGTCCCTGTGCCCTTTTCTGATTCTAACTTATGCTTTA
TCTATCTTTGCTTATTTTTTTCACTAACCAACTTTTTCGTTTTGTTAATT
TCTTTATTTACTTTTTTCTGTTTTCCACTTGAATTCAATTTTCTTCCCTC
ACTTCTTTATTATTTTCTTGCCTCTTTTTCTCCTTTACTTTTCTTATCTT
TACTTCTCTTTATTTTCTCTATCCTTTCTTCTTCTCTACTCTTCCTTTAT
CTTCTTTTTATTCTACTCTTTTTCTTATCCCCTCTCTCTTACCTCTCTTT
TTTTTTACTCCTTTTCCTACAATATTTCTTTCTCTACTATTCTTCTACTC
ATTTCATTTTCTTTTATTCTTCCTCACTTTATTCTTTTCTTCTCTTCTTA
TTTTTCTTCTTT

NAATTTCCNNNNNAATGCACGTGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAGTAGCTACTTAAGTATTAC
TGTTCATTACTTGACAAAAGTATTTATCGAATTCAAGTATGTTTAATTTA
TTTTATTATTTTTGACTATGGTATTGTTGTCACCAACTTTACTGCTGAGG
TCCCTCTACTTTCTTTGATCTGAAACTTTCAATTTTCTTTTTAAGGGAGA
AATGACCCATCTTCTGGAAACCAACTTCTAGAAAGCATGCCTTTAATTCT
TTTTTATTACTGACTTTATTTTATTTATTTTTTGTTATCTTTAACCTTTT
TTTACAAGTCAGTCATTATCCCCCTCCTGTTATTCCCTCTGACAGATCCT
TATCCCACGCCCCCATACCAAAGAGGATGTCCCCCACACCCCAACACTCC
TCACACCAGCCAGGCCTCCCCACTCTCTGGGGCCTGAACTCTCTCAAGGG
TTAGGTGCTTCTTCTCTCTCTGAGGCCAGACCAGGAGTCCTCTACTGTAT
ATGTGTCTGGGGCCTAAAACCAGATAGTGTATGCTGCCTGGTTGATGGCT
CAGTGTCTGAGAGATCTCAGGGGTCCAGGTTAATTGAGACTGCTGGTCTT
CCTATGGTGTCACTCTCCTCCTTAGCTTCATTCAGTCTTTCCCTAACTCA
ACCACATGGATCTCCAGCTTCTATCCATTGGTTGGGTGTAAGTATCTGCT
CCTGTCTCAGTCAGCTGGTTGTTGGGCCTCTTGGAGGGCACCCATTCTAT
GCTCCTGTCTGAATGTGCACCATAGCATCAATAATAGTATCAGGCCTTGG
AGCCTCCCCTTTAAATGGGTCCCAGTATGGGCTTGTAACTGAACCCCCTT
TCCCTCAGTCTCTTCTCGATTTTGTCCCCTGCAGTCCTTTTAGAAAGGGT
TCCCCCTAACCATACCTGAACCTATTTCTCTTTTCCCCCTGCCCCCTACC
CATCCTCTTTTCTCTCCCCAGATCCCTTCCCTTCCCTTTAACCCTTCTGG
ATTTTCTTCTCCCCCCCCCAAGGGGGGAATTGAAAACCCCCCTCCCCCTT
GGGGACCCATAAATGGTTCCCATAAAAATGGGTATCCCTGGAAAAATTTC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_b22.g1 MSMg01no122_b22.g1 CHROMAT_FILE:
MSMg01no122_b22.g1 PHD_FILE: MSMg01no122_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:14 2005
         (729 letters)



>mm_chr9_91743807_91744936
          Length = 1130

 Score =  861 bits (445), Expect = 0.0
 Identities = 514/537 (95%), Gaps = 3/537 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttaagtattactgttcattacttgacaaaagtatttatcgaattcaagtatgtttaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 acttaagtattactgttcattacttgacaaaagtatttatcgaattcaagtatgtttaat 477

                                                                       
Query: 61  ttattttattatttttgactatggtattgttgtcaccaactttactgctgaggtccctct 120
           || |||||||| |||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 476 ttcttttattacttttgactatggtattgttgtcaccaaagttactgctgaggtccctct 417

                                                                       
Query: 121 actttctttgatctgaaactttcaattttctttttaagggagaaatgacccatcttctgg 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 416 actttctttgatctgaaacttttaattttctttttaagggagaaatgacccatcttctgg 357

                                                                       
Query: 181 aaaccaacttctagaaagcatgcctttaattctttttt-attactgactttattttattt 239
           |||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 356 aaaccaacttctagaaggcatgcctttaattctttttttattactgactttatttaattt 297

                                                                       
Query: 240 attttttgttatctttaaccttttttt-acaagtcagtcattatccccctcctgttattc 298
           ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 296 attttttgttatctttaaccttttttttacaggccagtcattatccccctcctgttattc 237

                                                                       
Query: 299 cctctgacagatccttatcccacgcccccataccaaagaggatgtcccccacaccccaac 358
           ||||||||||||||| ||||||| |||||||| |||||||||||||||| ||||||||||
Sbjct: 236 cctctgacagatcctcatcccacccccccatatcaaagaggatgtcccc-acaccccaac 178

                                                                       
Query: 359 actcctcacaccagccaggcctccccactctctggggcctgaactctctcaagggttagg 418
           |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 177 actcctcacaccagccaggcctccccactctctggggcctcaaatctctcaagggttagg 118

                                                                       
Query: 419 tgcttcttctctctctgaggccagaccaggagtcctctactgtatatgtgtctggggcct 478
           ||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 117 tgcttcttctctcactgaggccagaccaggagtcctctactgtgtatgtgtttggggcct 58

                                                                    
Query: 479 aaaaccagatagtgtatgctgcctggttgatggctcagtgtctgagagatctcaggg 535
           | ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 57  agaaccagatagtgtttgctgcctggttgatggcttagtgtctgagagatctcaggg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 729
Length of database: 1130
Length adjustment: 10
Effective length of query: 719
Effective length of database: 1120
Effective search space:   805280
Effective search space used:   805280
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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