BAC Information

Click to search

BAC

Clone NameMSMg01-122E08
Chromosome9 (Build37)
Map Location 7,941,140 - 7,941,911
singlet/doubletsinglet
Overlap geneYap1
Upstream geneDync2h1, LOC100039658, Dcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3
Downstream geneEG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6, Pgr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122E08.T7 (MSMg01no122_e08.b1)MSMg01-122E08.TJ (MSMg01no122_e08.g1)
ACCAG332175AG332176
length1,1011,101
length of high quality
(start - end)		781 (43 - 823)744 (75 - 818)
definitionCHROMAT_FILE: MSMg01no122_e08.b1 PHD_FILE: MSMg01no122_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:33 2005CHROMAT_FILE: MSMg01no122_e08.g1 PHD_FILE: MSMg01no122_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGTGCACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTCACTGATAACATCATTTTGAAAGGTAAGAAGTGACTCTATAATGG
TGGTTTTCCTATGAGTGGCTTCTTGCTAAGACATCTTTTTTCTTTCTATT
ATTTAGGGTTCAAGAAAGGCAATGCTCTTCCCATGTTAACTCCTACAACA
ATCCCAGCTGCATTTTGAGATTGAATTTTGCAGGACATGTCTTTAAAACT
CTGAACAGATAGCAGGCTCGTGGTGCTTAGCATGCCATATTAACCTATGC
CCTGTAAGGACAGGGTGAAGAGACAGATGGAACACAGGGCCTCCAATGGA
GGAGGAGCTAGAGAAAGGACCCAAGAAGCTGAGGGGTCTGTAACCCTATA
GGAGGAACAACTATATGAACTAGCCAGTACCCCCAGAGCTGTGTCTCTAG
CTGCATATGTAGCAGAAGATGGCCTAATCGGCCATCATTAGGAGAGTCCC
TTGGTCTTGCGAATTATATACCCCAATACAGGGGAATGCCAGGGCCAGAA
AAAGTGGGAATGAGTGGGTTGGGGAGCAGGGCAGGGAGAGGATATAAGGG
ACTTTCGGGATAGCATTTGAATTGTAAATGAAGAAAATATCTAATAAAAA
TTTGTTTAAATAAAAAAATAAATTAACAAAACCCAAAACAGTAGCAACAC
TGAGCCAGGGTTCTGTGACATGCTAGGCAAGCAAGTACTGCCAATATCCA
TATCCCAGCACCTCAGAATGCATCTTATCAAAGACGCATATTTTTTGCCT
GCCTTGTTTTGAATTCTGTTCAGTCAACAGCAGCATGGTCCATAGCTGAC
AAACAGTTAATAGAAATAACTGTAGTGTGCTGAATCTTCATATTTTAACA
ATATTTTATCTTGGCTCTTTTGAAAAATGTACTTTTTCCAGGTTTACTGA
ATGGGTTAAAACTTAATAATCACCCCTCTGGAAGGTTGGAATGGAGAACT
TGTTACTTTTAATTTCACCCCCTCCCCAAAGGTCTAAAAATCCAATATCC
GTCCCTGTTTTATAAAAAGTCAAATCCTGGGTCCACAAAAAAAGAATAAT
C

TTTTTATTCAATGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTAAAATCCCTGAGGCAGTCTCGTCCACGT
GAGCTGCCTGGTTCTTCTGTTCTCTGGGTCTCGCCATTCAAAGGCAAACA
AGGGCTGGCTGTTAGGGTGTAGTCTCAGGCAAAAGAAAGCATCTTTAAGA
TCTAAGACCATATACCAGGTTTGTCCGGGTGGCAGCGTGCTGAGCAGGTT
GTAAGGATTGGGCACTGTGGGGTGGATATCTTGAACTCTTATTGACCTCT
CTAAGGTCCTGTATGGGGCGATAGTCATTTGTCCCCAGTTTCTTTACCAG
GAGTAGGGGGGTATTCTAAGGAGACGTACATGGGACTAGGATCCCCTGTT
GGAGCATGGGACTAGGATCCCCTGTCTGGTGATATGGCGGTGTATGCCCT
CCTGTGCTTCTCTGCCCATGGGATACTGTCGGACCCCAATGGGAATGGCC
CCAGACTTAAGCTCAGTCACCACCAGGGGAACTAGTCTCACCATTTCCAT
TCTCCCTGTTTTGGCCCATGCCTGAGGAAATTGAGTAAGCCAGTCCTATA
GTCCCTCAGGGGGTTTCATTCTATTTTGATAAATCTGATACTCTTCTCTT
AATTGTAAAGACAACACTAAGGTCTGAGATGTCTCAGTCCCCCAGGACAA
TTCTGGTGCAGAGGGGCAAATGTTATTTATGCCTTTAATTTGGTTAATAA
GTCTCTTCCCAGTAAGGGGATAGGGCATTCTGGAATGACTAAAAATGAAT
GAGTTACTTGACTCTTCCCTAGGTCCACTGTCCGGGAAGTGGTCCATGGA
TATGGTTTCTGCCCTGTGGCCCCAATCTCTAGCATCTTCCTGTTTTTAAT
CTCACCCCATAGGTGTTTTAAGCACTGAATAATCCGCACCAGTTATCCAC
CAAAAAACTTATAAGGGTCCCCCTCCACTCTTTAAGGTTCCCCTAGGCTC
CGGGAAGGGGGCTTGAACCCCTGTTCTCTCCCTAAACTTTCATCATTCAT
CCAAGGGGCAAAGGAACCTTTTGGCTTCCCGGGGTTCCTTTTTTTGTGGG
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_e08.b1 MSMg01no122_e08.b1 CHROMAT_FILE:
MSMg01no122_e08.b1 PHD_FILE: MSMg01no122_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:33 2005
         (781 letters)



>mm_chr9_7940936_7942116
          Length = 1181

 Score = 1307 bits (676), Expect = 0.0
 Identities = 750/784 (95%), Gaps = 19/784 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctcactgataacatcattt----tgaaaggtaagaagtgactctataatggtg 60
           |||||||||||||||||||||    |    ||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcactgataacat----taccctgaaaggtaagaagtgactctataatggtg 260

                                                                       
Query: 61  gttttcctatgagtggcttcttgctaagacatcttttttctttctattatttagggttca 120
           | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctttcctatgtgtggcttcttgctaagacatcttttttctttctattatttagggttca 320

                                                                       
Query: 121 agaaaggcaatgctcttcccatgttaactcctacaacaatcccagctgcattttgagatt 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaaggcaatgctctttccatgttaactcctacaacaatcccagctgcattttgagatt 380

                                                                       
Query: 181 gaattttgcaggacatgtctttaaaactctgaacagatagcaggctcgtggtgcttagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattttgcaggacatgtctttaaaactctgaacagatagcaggctcgtggtgcttagca 440

                                                                       
Query: 241 tgccatattaacctatgccctgtaaggacagggtgaagagacagatggaacacagggcct 300
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 cggcatattaacctatgccctgtaaggacagggtgaagagacagatggaacacagggccc 500

                                                                       
Query: 301 ccaatggaggaggagctagagaaaggacccaagaagctgaggggtctgtaaccctatagg 360
           ||||||||||||   |||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct: 501 ccaatggaggag---ctagggaaagtacccaagaagctgaagggtctgtaaccctatagg 557

                                                                       
Query: 361 aggaacaactatatgaactagccagtacccccagagctgtgtctctagctgcatatgtag 420
           ||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 558 aggaaaaacgatatgaactagccagtacccccagggctgtgtctctagctgcatatgtag 617

                                                                       
Query: 421 cagaagatggcctaatcggccatcattaggag---agtcccttggtcttgcgaattatat 477
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 618 cagaagatggcctaatcggccatcattaggaggagagtcccttggtcttgcgaattatat 677

                                                                       
Query: 478 accccaatacaggggaatgccagggccagaaaaagtgggaatgagtgggttggggagcag 537
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gccccaatacaggggaatgccagggccagaaaaagtgggaatgagtgggttggggagcag 737

                                                                       
Query: 538 ggcagggagaggatataagggactttcgggatagcatttgaattgtaaatgaagaaaata 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ggcagggagaggatataagggactttcgggatagcatttgaattgtaaatgaagaaaata 797

                                                                       
Query: 598 tctaataaaaatttgtttaaataaaaaaataaattaacaaaacccaaaacagtagcaaca 657
           ||||||||||| ||||||||||||||||     |||||||||||||||||||||||||||
Sbjct: 798 tctaataaaaaattgtttaaataaaaaa-----ttaacaaaacccaaaacagtagcaaca 852

                                                                       
Query: 658 ctgagccagggttctgtgacatgctaggcaagcaagtactgccaatatccatatcccagc 717
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 853 ctgagccagggttctgtgacgtgctaggcaagcaagtactgccaatatccatatcccagc 912

                                                                       
Query: 718 acctcagaatgcatcttatcaaagacgcatattttttgcctgccttgttttgaattctgt 777
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 acctcagaatgcatcttatcaaagacgcatattttttgcctgccttgttttgaattctgt 972

               
Query: 778 tcag 781
           ||||
Sbjct: 973 tcag 976


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 781
Length of database: 1181
Length adjustment: 10
Effective length of query: 771
Effective length of database: 1171
Effective search space:   902841
Effective search space used:   902841
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |