BAC Information

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BAC

Clone NameMSMg01-122H14
Chromosome9 (Build37)
Map Location 44,414,639 - 44,415,113
singlet/doubletsinglet
Overlap geneDdx6
Upstream geneLOC384931, Pvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1
Downstream geneLOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122H14.T7 (MSMg01no122_h14.b1)MSMg01-122H14.TJ (MSMg01no122_h14.g1)
ACCAG332329AG332330
length1,2251,262
length of high quality
(start - end)		---471 (175 - 645)
definitionCHROMAT_FILE: MSMg01no122_h14.b1 PHD_FILE: MSMg01no122_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:57 2005CHROMAT_FILE: MSMg01no122_h14.g1 PHD_FILE: MSMg01no122_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTATTCCTTNNNTACATTGGGCGCTATAGACTCCTATAGGGAGAGGATCC
GCGGAATTCACTTTGGAGAACATGCCCTTAAAAGGCCTCCAAAATCCACC
TGCGCCTGCCTCCCACCCCTTATAAATTACAGGCATGNCCCACCACGCCT
GACTCACGTGCATTTTTTTTTTAAATTACTTATTAGATGCTATGAGTGTT
TTGCCTGACGGGATGTATGACTGTGCACCATATCTGGCCTGTCGCCCTTG
GAAGTCAGGGCATCATATCCCAACCAACTGGGATTACATATGGTTGTGAG
CTGTCAAGTATGTGCTGCGAACTGAACCAGATGCCTCTGTACTAACAAAA
AGTACTTTAAACTGTTCAGCTCTCTCTCTCTCTCCAGCCACCATCGTTTC
CTTTTTTTTTGCAAGGAAGTAAAACCCCTCTCGTGAGAATATGGTGGCTG
TCTGTCCATCTACCTCACTCAAGGGTGCCCTTAAGAGCATCTGAGTCAAT
AGATACCGATTTACTCAATCCATCTTGCTCTCCCCTCCCCCTCTTTTAAG
ATTTTTGAACTCGTTATTGTTTTTTTTTATGCACGGGACGATGTGAGTAC
ACCACCGTTGGCTTCTTACACCCCTGAATAGGTTATCAGATCCCCTCACA
AATGGTTGTGACCCACCATGCGGTTGCTGTTGACTGATCTCTGGACCTCT
GTAAGAGCAGTCTATGCTTTTATCCCCCTGAGACATCTCTCCTGTCCCTT
GTTCTCCCCCTTGAATTGTTCTTTCTTGCAAATGATGTCTGATCCTTCCC
AACTGCTTCCCTGTCACCCCCTCATCCCTCCTACCCTTTTCATTTTGCTT
TCCCCTTTCCATTCCTCCTCTTTGACTTTCCTACTTTTTTCCCTTATCTT
TCTCAAATCTATTCTTTTTCATAACATTTGCCTCTTTTTTGTTTTTTCCC
CTACTCCTTCCATCTATCCCCCTTTTCTACATGCTCCTCATTCTTCTCTC
TTCTTTCTCTCTCTTCTTTCTTAACTTCTTCTTTTCCTGTCTCTTACTCT
TCTTCTTCATCCCCCTACTTATTTTTCTTTCATACTTCTTTTTTCCTTCC
TTTCTTCCTTTCTTCTCCTCTGACTTTTTCCTCTCATTTAATTTCTTCCT
CTTCTTCTCTCACTCTCTTCTCTTCTATTTTCTCCTTCTTTATCCTTTTT
GCATCATCTTTCTCAGTCATTATCT

TTNTTCCACGTGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTTTTAAACTCCGAACTGAAACGAAGAAAAAATT
AAATGACCCTTCAAAAAACGTGGAGGAAAATTGTTCCCTATTTAAAGAGC
TCCTTTGGAAAGCTCACCTTCTAGAGAACCACTAACAGCCACACTCAGGC
CAAATCACTACTTGAGATAAGAAAGACACATCGAAGAACTGCCTTAAAAA
ACCCAATCTACAAAAAAAAAAAAAAAAAAACTAACCTCAAACATTTAAAA
TTCCAAGATCAAAGAAACTTAGAGAAAGTGAGGCAGAAAGATACTATTGA
TAAAATTCAAATTCACTCTCAAATAACAATCTGTTCTCCAATCGCCCCTG
ATGATTTCGAAGTCCTGCCACCTTTAAAAGTCATTACGTTTAATTGCATT
AAGACTTGAAACATCACTCAATTTACTTAATGTACATCTAGATTTGACCA
AGACAAGTTATTAACTTTTTTTCTATTTCTGACAGAAACCAAAAACCTTA
AAATGAGAAGACTTTTCAAAAAAAAAAAAAAGTTGAAAGCTGTTAGTGCT
GCCTTTTAATACAACACTTTTCAAAATAAAGTTCAAAGGTGGGGGCGGGT
AGCCCTGTAGTTAAGGGGGAAAGAAATACCAGAGAGTTAAACTTACAGGT
TTAATAAAATTCTCCCAAATCACCTAGAATACAGCGCCCTATATAACAGT
TATTTTAAGAAAGAGTTGGTCAACCTCCTCTACTTTAAATTGTTCCCCAA
ATGGAATTCTCCCAATTTGGCAAATTAAATATTACTAACGCCTAGTACGT
ATAATTCCAACTCCTTCCGTTTTTATTTTTGTAACCCCCTTAACATTTCA
CTGGTCTCCCTAAACATTAAGTTTAATTAATACCTGGTTATTCTTTGCCT
CACCCCCATGTATCCCCAAATCCTTAACTTTAAAAATCCAAAAAAATTTC
CCAAGGTTAAAAAACTCTCCAACTTGGCTCCACAATGGCTTTCCTTTCCT
CATTAAATCTGCTTAAATTTTTTATTCCCTAAAACACGCATTTTTCCGGT
TATTTACCCGCCTTTTTATTCCTCTATAACTCCTGCTCCCTCTCTCTCCT
ATGAAATCCGTTTATCTGTGTTTCTCCATCCTCCTTAATACTGCATTAAA
GTGTGCGCACCACTCTTTGAATCTCCTAAACCCGACTACCTCTCTATGCA
TGTGCTCATGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_h14.g1 MSMg01no122_h14.g1 CHROMAT_FILE:
MSMg01no122_h14.g1 PHD_FILE: MSMg01no122_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:58 2005
         (471 letters)



>mm_chr9_44414352_44415218
          Length = 867

 Score =  843 bits (436), Expect = 0.0
 Identities = 463/480 (96%), Gaps = 14/480 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaccactaacagccacactcaggccaaatcactacttgagataagaaagacacatcga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 agaaccactaacagccacactcaggccaaatcactacttgagataagaaagacacatcga 703

                                                                       
Query: 61  agaactgccttaaaaaacccaatctacaaaaaaaaaaaaaaaaaaa---------ctaac 111
           ||||||||||||||||||||||||||||||||||||||||||||||         |||||
Sbjct: 702 agaactgccttaaaaaacccaatctacaaaaaaaaaaaaaaaaaaaaaaaaaaatctaac 643

                                                                       
Query: 112 ctcaaacatttaaaattccaagatcaaagaaacttagagaaagtgaggcagaaagatact 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ctcaaacatttaaaattccaagatcaaagaaacttagagaaagtgaggcagaaagatact 583

                                                                       
Query: 172 attgataaaattcaaattcactctcaaataacaatctgttctccaatcgcccctgatgat 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 582 attgataaaattcaaattcactctcaaataacaatctgttctccaatcgcccctgatgaa 523

                                                                       
Query: 232 ttcgaagtcctgccacctttaaaagtcattacgtttaattgcattaagacttgaaacatc 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 522 ttcgaagtcctgccacctttaaaagtcattacgtttaattgcattaagacttgaaatatc 463

                                                                       
Query: 292 actcaatttacttaatgtacatctagatttgaccaagacaagttattaactttttttcta 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 actcaatttacttaatgtacatctagatttgaccaagacaagttattaactttttttcta 403

                                                                       
Query: 352 tttctgacagaaaccaaaaaccttaaaatgagaagacttttcaaaaaaaaaaaaaagttg 411
           |||||||||||||||||||||||||||| ||||||||||||||||||||||     ||||
Sbjct: 402 tttctgacagaaaccaaaaaccttaaaacgagaagacttttcaaaaaaaaa-----gttg 348

                                                                       
Query: 412 aaagctgttagtgctgccttttaatacaacacttttcaaaataaagttcaaaggtggggg 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aaagctgttagtgctgccttttaatacaacacttttcaaaataaagttcaaaggtggggg 288


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 867
Length adjustment: 10
Effective length of query: 461
Effective length of database: 857
Effective search space:   395077
Effective search space used:   395077
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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