BAC Information

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BAC

Clone NameMSMg01-122H21
Chromosome9 (Build37)
Map Location 93,056,910 - 93,057,428
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114
Downstream geneLOC674371, LOC384967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122H21.T7 (MSMg01no122_h21.b1)MSMg01-122H21.TJ (MSMg01no122_h21.g1)
ACCAG332341AG332342
length1,1151,060
length of high quality
(start - end)
519 (126 - 644)---
definitionCHROMAT_FILE: MSMg01no122_h21.b1 PHD_FILE: MSMg01no122_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:00 2005CHROMAT_FILE: MSMg01no122_h21.g1 PHD_FILE: MSMg01no122_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGTTTTTTNNNAAGTCACTGCGCGCTATAGACTCCTAAGGGAGAGGATC
CGCGGAATTCAGCAGATTGGGCTCCCTTGAAATTGTTCAACAGAGCACAT
AGCATGCACAATGACTTAAGATTAGTCTCCAGTACTGGGATAAAGAGGGA
AATTTGAATTCACCTTATTCTCAGACTCATTTAGGACTGAAATTTAGTTT
GTGCTTCTGTTGAGGAAGCCAACTGAAGGCATTACCCTCAACTCATTACT
TATTTTTAACCACATCCAGGTAAAATGTTAGGTCATTCTGTAGTGGTCAT
GAATCTTTGCTATCCTTGGCTCAGGTCCTCAGCTGTCTAAGGTACCCAGC
CCTGTTATACTTCCTAGGTGGGACTCCAGAAGTTTGGACTTAAAAGATTT
ACAATGCAATGGTGCACCCAGTGGATCCAGTTTCTGTTTACACATTGTCT
TCACAATAACGTGCATAGCCTATTTTTGGTGTTTGATTGTTTGGTTGGTT
GGTTTTGGCTTTTCTTGTCTTTTGTTTTGTTTTTGCTACTAGCATTAGTT
TGGAGAATTGGTAACTATTAATAACAAAACAGAAAACTTTTTCTTTTGTG
AGATGATGTAGATATCATCAAATATATAGTTCAACCAATGAAAAACTTTA
ATAAGAATAAATTTGTGGACAATGCAACTGTATCAGAACACAAGATATTA
AGGTCACAATATTAAAATTTATAATATTCATAATTCATAATAGCCTTTCT
ACAAGCATGTTGATGGCCCATGTTCCCAATTCTTATATTGTTATTAAAAC
ACAAAACTACCGCTGAAATTAATTTTTTACAGTTCAACTTTACTATTGGT
TTGAAAAAAGCCATTGATATCTGGTTCCTTTATTTTCAAACAAAGTATTA
ATTTATTTAATTGGATCCAAAAATGGTGTTTTTTTTCCCTTATTCCATCA
ATTTTATTTTTAAATGGTATTTGGGTCCCAAATGTTTTGTGTGCTCTATT
GTTTACTGGGTAACTAAAAATTAATTTTCTCATGAAAAACAAAGTTTGCT
ATTATGTAAATTGTGTTTTGCAGATTCTCTCTTCCCAAATATCTTCCTCT
TAGACTCGGCGCTAC
GGGAGACNNNAAAGATCGGAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATTGAACCTCCCCGNGNAGNANNGGGGGGG
GGAAGGACCTTTAAAGCCCCCCCNNNNAGANGNCNGGAAAGNAAGAAGCN
CCCAGGACCCAACAGGAAGGAGANNAGTTTCTCGGGGCAACCCCCGGGAA
GAAGAACAGGAAGAGACCGGAGCCAGAAGNNAGNCAAGGGCCCCGGNGGG
AGAAGGAGGCCACACACCCGNCNCCAAACNNNAAACCCAAAAGGGCNCNA
GGCNAAAGGAAANANGGAGANAATTGNGGAGCAGAGACGGAAGGAAAGNC
ANCCAGAGACCGCCCCACCGGGGGANCNANACCAAANACATTTTTTTTAC
CCAGACACCANNGGAGANGCCAAGAAGAGAAAGCCGACCCGCGTCTTTTA
CAGCCGCCCCCCGAGAGGCNCGGCCAGAGAAAGAAAAAGACAGACACAGA
GGCNCCCAGCCANCCANGGGGCCAAGCAGGAGGCCACCAACGGAGAAGCC
AGAGAAAGAACGGAAGGAGNCCGCAACCCCANAGNAAGAACAACAACACC
AGGCAACCAGAACCCCCAGAGCCGCCAGGGACNAAACCACCAANCAAAAA
CANACAGGGAGGAACCNAGGGCCCCAGCCCCAAAGGGAGCAGAGGAGAAC
ANCGGCCGGCACCAACAGGAGGAGAAGCCCCCGGACCCGAGAAGGGCAAA
CCCTCTTTTGTTTTGGAAAGCTAGGGCGGCGAGGTGGGAGGGGAAGCACC
CTTGTAAAACCAGAAGGAGGCAGGAGGGTAAAGGGACATTGGCCGAGGGA
AAAACGGGAAAGGGGAATAAAAATGTGAAATGTAAAGTAGCAATACTCCC
CGGAATTAACACAAAGATAGGCCATAGATCGGTAATTACCCGAAATACTC
TATAATTTACGCTCGTAAAAATTGAGGGCTTCGAAAGGCCTCTCGGGAGC
TCGANNNAAANNGGTNNAAAAGGGATANTATATAGGGGGAAAGAAAGGAA
ATTTGGAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_h21.b1 MSMg01no122_h21.b1 CHROMAT_FILE:
MSMg01no122_h21.b1 PHD_FILE: MSMg01no122_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:00 2005
         (519 letters)



>mm_chr9_93056710_93057628
          Length = 919

 Score =  957 bits (495), Expect = 0.0
 Identities = 513/519 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctccagtactgggataaagagggaaatttgaattcaccttattctcagactcatttagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctccagtactgggataaagagggaaatttgaattcaccttattctcagactcatttagg 260

                                                                       
Query: 61  actgaaatttagtttgtgcttctgttgaggaagccaactgaaggcattaccctcaactca 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgaaatttagtttgtgcttctgttgaggaagccaactgaaggcattaccctcaactca 320

                                                                       
Query: 121 ttacttatttttaaccacatccaggtaaaatgttaggtcattctgtagtggtcatgaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacttatttttaaccacatccaggtaaaatgttaggtcattctgtagtggtcatgaatc 380

                                                                       
Query: 181 tttgctatccttggctcaggtcctcagctgtctaaggtacccagccctgttatacttcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgctatccttggctcaggtcctcagctgtctaaggtacccagccctgttatacttcct 440

                                                                       
Query: 241 aggtgggactccagaagtttggacttaaaagatttacaatgcaatggtgcacccagtgga 300
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 441 aggtgggactccagaagtttggacttaaaagagagacaatgcaatggtgcacccagtgga 500

                                                                       
Query: 301 tccagtttctgtttacacattgtcttcacaataacgtgcatagcctatttttggtgtttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccagtttctgtttacacattgtcttcacaataacgtgcatagcctatttttggtgtttg 560

                                                                       
Query: 361 attgtttggttggttggttttggcttttcttgtcttttgttttgtttttgctactagcat 420
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgtttgtttggttggttttggcttttcttgtcttttgttttgtttttgctactagcat 620

                                                                       
Query: 421 tagtttggagaattggtaactattaataacaaaacagaaaactttttcttttgtgagatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagtttggagaattggtaactattaataacaaaacagaaaactttttcttttgtgagatg 680

                                                  
Query: 481 atgtagatatcatcaaatatatagttcaaccaatgaaaa 519
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgtagatatcatcaaatatatagttcaaccaatgaaaa 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)