BAC Information

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BAC

Clone NameMSMg01-122J04
Chromosome9 (Build37)
Map Location 39,987,824 - 39,988,561
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279
Downstream geneOlfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122J04.T7 (MSMg01no122_j04.b1)MSMg01-122J04.TJ (MSMg01no122_j04.g1)
ACCAG332396AG332397
length1,1601,179
length of high quality
(start - end)		731 (90 - 820)740 (80 - 819)
definitionCHROMAT_FILE: MSMg01no122_j04.b1 PHD_FILE: MSMg01no122_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:10 2005CHROMAT_FILE: MSMg01no122_j04.g1 PHD_FILE: MSMg01no122_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTACCCTTNNNNAACCTTTGGGCGCTATAGACTCCTATAGGGAGAGGATC
CGCGGAATTCAAGGCCCATACCAAAACCTTATAAAAGCCATTTACTGCAA
ACCAACAGCCAATATCAACTCAAATGGAGACATACTTGAAGCAATCCCAC
TGAAATTTCGGACAAGACAAGAATGCCCATATCTCTTCAATATAGTACTT
GAAATGTTAGCGAGAACAATAAGAAAACAAAAAGAGATCAAGGGGATACA
AATTGGTAAAGAAGAAATAAAGGTATCACTATTTGCAGATGATATGATAA
TATACATAAGCAACCTCCAAATTTCTACCAGAGAACTTCTCCAACTGTTA
AACAACTTCAGCAAAGTGGCCAGATATAAAATTAACTCAAATAAATCAGT
AGCCTTCCTTTAGACAAAGGATAAACAGGCTTGGAAAGAAATTAGGGAAA
TAATTCCCTTCACAATAGCCACAAATAGTATAAAATATCTTGGGTAAACT
CTAACCAAACAAGTGAAAGACCTATATGACAAGAACTGTAAGTCTCTCAA
GAAAGAAATCAAAGATGATCTCAGAAAATGGAAAGATCTTCCATGCTCAT
GGATTGGCAGAATTAACATAGGAAAAATGGCTATCCTACCAAAGGCAATC
TATAGATTCAATGCAAACCCCGTCAAAATCCCAACACAATACTTCAACAA
TATGGAAAGAGCAATTCTCAAATTCATCTAGAAAGGAAAAAGACCCAGAA
TAGTGAAAACTATTCTGAACAATAAAAGACCAGCTGGGGGAATCACCATC
CCTGACCTCAAACTTTACTACAGAGCCATAGTGATAAAAACTTTATGGTA
TTGGTACAGAGACAGACCATGTTGATCCATGGAATAGAATTGAAGACCCA
GAAATAAAACCCCACATTTACTGTCACTTGATCTTTGACCAAGACGCCCA
AAATAATACATGCTTTGAAGAAAGAATCTTCAATAATTGGTGGCTGGTCC
AACTGGCTGTCTATATGGAAAAAGAATGAAAATAGACCCATATTTGTCCC
CTTGTACCTAAGCTGAAAGCCCCCGGTGGAATCATGGAACCCCCAACCTA
AAACCCAAAATACCCCTGAATCCTAAAAAAAAGAAGAAAGGGGTAAAAAG
AACCCTTTGA

TTTTTGTATCAGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTTTCTTCATACAGAGTTTAAGAAATAAGAAA
ATTCCTCAGCCGTTTAGAAGGATTGCATTGAGTGTGATTAACGGACGAGT
TCATACCAGTCCAAGTTTTCTTCTTTGAAAATAATGATTTGTTAGTGGGC
CACCTTTCTAGTCTCCTCTGAGACACCAGTCCCCGTAGATGAGCTTCAGA
TGGTCCTGGGAGGAAAGGAAGTTCTCACTAAAAGTTTATTCACAAGTCAA
GCTCAAGAACTTGCAGTTTCTGAGTCCTAATTGGTATCCATCATTCTTGT
GTTCTTAAGGTAATTAATCTTCATCCGAGAACCTACACTTTTACTTACTA
GATGTTCAATTTCTCAGGTTCACTAAGAATGGAAATCAATGGTATCTGAC
TGGTTAAGTGAGGGACTCCACATAAATCGTGGGTAGGACACTTTATTAAT
GAGATGGCAAATGGTCAAGGGCACAGAAATTTGAGAGCAAATGAAATAGA
GTTGTATTCGAGTTTTGTATGAACCATCTCGAAGGTGACTAATGAAAAGT
CAGACAGCCACATGTTCAATGCTATTTAGAGAGCTGATAGAGGGAACATA
AATAACTCATCATTGGAGAAGGCTTTCTGTGAAATATGAAAATTGGTTTG
GAATTATAAATTGCTCACAACTGGAGCCAAGAAGCTATCTCCAGTTGACA
TCTGCTTGCAAAGGAACAATTAGTTTTCTCCAATGGAGCCTCACTGGATA
TATTAACCACACACACACAGCAGTAAATGGCCAACACAAGATGAACTCAA
TGGCATTTTTATAGATGTTTTGTCTCATATCCCATTGTTTTGGGGATTTT
TTTTAACTTTTTAAAAATTTTTTATTAGATATTTTCCTTTATATACTTTT
CAAATGCTTATCCTGAAAATTCCCCTATACCCTTCCCTCCGTCCCCGTTC
CCTTACCCAACCAATTCCCGGTTTTTTGGTCCCCTGGCATTCCCCTGTAC
TGGGGGGAATATAAAGGTTTGCCAAATATCACGGGGGACTTCTTTTTCTA
ATTGGGGGAAATTTTGTTCCTTAACGGGCTTTTCTGGCCTGTGAATTAAA
CAGAAATTTTCCCAATTTTCTGGGTTTNT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_j04.g1 MSMg01no122_j04.g1 CHROMAT_FILE:
MSMg01no122_j04.g1 PHD_FILE: MSMg01no122_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:10 2005
         (740 letters)



>mm_chr9_39987730_39988868
          Length = 1139

 Score = 1382 bits (715), Expect = 0.0
 Identities = 733/739 (99%), Gaps = 1/739 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   agagtttaagaaataagaaaattcctcagccgtttagaaggattgcattgagtgtgatta 61
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 832 agagtttaagaaataagaaaattcctcag-tgtttagaaggattgcattgagtgtgatta 774

                                                                       
Query: 62  acggacgagttcataccagtccaagttttcttctttgaaaataatgatttgttagtgggc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 acggacgagttcataccagtccaagttttcttctttgaaaataatgatttgttagtgggc 714

                                                                       
Query: 122 cacctttctagtctcctctgagacaccagtccccgtagatgagcttcagatggtcctggg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 cacctttctagtctcctctgagacaccagtccccgtagatgagcttcagatggtcctggg 654

                                                                       
Query: 182 aggaaaggaagttctcactaaaagtttattcacaagtcaagctcaagaacttgcagtttc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aggaaaggaagttctcactaaaagtttattcacaagtcaagctcaagaacttgcagtttc 594

                                                                       
Query: 242 tgagtcctaattggtatccatcattcttgtgttcttaaggtaattaatcttcatccgaga 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tgagtcctaattggtatccatcattcttgtgttcttaaggtaattaatcttcatccgaga 534

                                                                       
Query: 302 acctacacttttacttactagatgttcaatttctcaggttcactaagaatggaaatcaat 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 acctacacttttacttactagatgttcaatttctcaggttcactaagaatggaaatcaat 474

                                                                       
Query: 362 ggtatctgactggttaagtgagggactccacataaatcgtgggtaggacactttattaat 421
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 473 ggtatctgactggttaagtgagggactccacatgaatcgtgggtaggacactttattaat 414

                                                                       
Query: 422 gagatggcaaatggtcaagggcacagaaatttgagagcaaatgaaatagagttgtattcg 481
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 413 gagatggcaaatggtcaagggcacagaaatttgagagcaaatgaagtagagttgtattcg 354

                                                                       
Query: 482 agttttgtatgaaccatctcgaaggtgactaatgaaaagtcagacagccacatgttcaat 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 agttttgtatgaaccatctcgaaggtgactaatgaaaagtcagacagccacatgttcaat 294

                                                                       
Query: 542 gctatttagagagctgatagagggaacataaataactcatcattggagaaggctttctgt 601
           ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 293 gctatttagagagctgataaagggaacattaataactcatcattggagaaggctttctgt 234

                                                                       
Query: 602 gaaatatgaaaattggtttggaattataaattgctcacaactggagccaagaagctatct 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 gaaatatgaaaattggtttggaattataaattgctcacaactggagccaagaagctatct 174

                                                                       
Query: 662 ccagttgacatctgcttgcaaaggaacaattagttttctccaatggagcctcactggata 721
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 ccagttgacatctgcttgcaaaggaacaattagttttctccaatggagcctcactggata 114

                              
Query: 722 tattaaccacacacacaca 740
           |||||||||||||||||||
Sbjct: 113 tattaaccacacacacaca 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 740
Length of database: 1139
Length adjustment: 10
Effective length of query: 730
Effective length of database: 1129
Effective search space:   824170
Effective search space used:   824170
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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