Query= MSMg01no122_j21.b1 MSMg01no122_j21.b1 CHROMAT_FILE:
MSMg01no122_j21.b1 PHD_FILE: MSMg01no122_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:17 2005
(437 letters)
>mm_chr9_102141940_102142776
Length = 837
Score = 828 bits (428), Expect = 0.0
Identities = 434/436 (99%)
Strand = Plus / Minus
Query: 2 gctgattatgcatagtcttgcagcacaaactcatgggtcagtcaggatggctaaggtaaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gctgattatgcatagtcttgcagcacaaactcatgggtcagtcaggatggctaaggtaaa 578
Query: 62 cagatttcatctcttagaactcatgggaccagaagactagaaaataccaggctcctgcgt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cagatttcatctcttagaactcatgggaccagaagactagaaaataccaggctcctgcgt 518
Query: 122 tttaatggatttttgacacttctcacaaaaatgtcagtaggtaaacaaatagcagagggc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 517 tttaatggatttttgacacttctcacaaaaatgtcagtaggtaaacaaatagcagtgggc 458
Query: 182 tttgggccaggtggactcaatcaacttgctggatattcatatggataatgtcccctggcc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tttgggccaggtggactcaatcaacttgctggatattcatatggataatgtcccctggcc 398
Query: 242 ttgaatccctggggttctgtttcctctttatacccatggtgactggattggacagagggg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttgaatccctggggttctgtttcctctttatacccatggtgactggattggacagagggg 338
Query: 302 tatgacctgaagtaacttgatgtgggtctgggaagaaactttgctgtcaatctggttcaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tatgacctgaagtaacttgatgtgggtctgggaagaaactttgctgtcaatctggttcaa 278
Query: 362 cgcacccgatgtctgggactgtgtgtgggtatccaggcttctgaggcctgccatgcctgt 421
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cgcacctgatgtctgggactgtgtgtgggtatccaggcttctgaggcctgccatgcctgt 218
Query: 422 gcctattgacatgcta 437
||||||||||||||||
Sbjct: 217 gcctattgacatgcta 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space: 354384
Effective search space used: 354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_j21.g1 MSMg01no122_j21.g1 CHROMAT_FILE:
MSMg01no122_j21.g1 PHD_FILE: MSMg01no122_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:17 2005
(624 letters)
>mm_chr9_102043917_102044941
Length = 1025
Score = 1000 bits (517), Expect = 0.0
Identities = 584/627 (93%), Gaps = 35/627 (5%)
Strand = Plus / Plus
Query: 1 tgtgtaaaaatctcccagctctctcagtcctgtcctgtggcatatgaactcttgggcatg 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgtaaaaatctcccagctctctcagccctgtcctgtggcatatgaactcttgggcatg 260
Query: 61 cagtagagacacagtggctgggctgccacagtctggtcatattctgtcctccagtggata 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 cagtagagacacagtggctgggctgccacagtctggtcacattctgtcctccagtggata 320
Query: 121 cactgactgcacactgtctcaaacatgtgaacaccatccatcaacccgaagacaagcatt 180
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 321 cactgactgcacactgtctcaaacatgtgaacaccatccatcaaccctaaggcaagcatt 380
Query: 181 gtcggcccagaccacacactgaccctacacgatggccaccctctgcccctcatacaagcc 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 gtcggcccagaccacacactgaccctgcacgatggccaccctctgcccctcatacaagcc 440
Query: 241 ctt-gatactccttagaggatgatgtcaccgaagcagtcattcttgtttgcaagtgaagc 299
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttgatactccttagaggatgatgtcaccgaagcagtcattcttgtttgcaagtgaagc 500
Query: 300 aaggtgaacaatgaccatgcttcatgctttcagctaaccaacaaagatgttcacacacac 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 aaggtgaacaatgaccatgcttcatgcattcagctaaccaacaaagatgttcacacacac 560
Query: 360 acacaca--cacacacacacacacacacacacacacacacacactgatgtttggcccaag 417
||||||| || | ||||||||||||||||
Sbjct: 561 acacacaggca-a-------------------------------tgatgtttggcccaag 588
Query: 418 cataaatggggcaaaggttaggactgttgggaaggtcctgctgaggaaaatctttcattc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 cataaatggggcaaaggttaggactgttgggaaggtcctgctgaggaaaatctttcattc 648
Query: 478 tcaagtgaacaggtgtcaagtctatcttggcttgtaagtgtatttgagatgtagggttgt 537
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 649 tcaagtgaactggtgtcaagtctatcttgacttgtaagtgtatttgagatgtagggttgt 708
Query: 538 ggtcactttgaaacctttccagtcaacagtacctgccagcatttcttttcctgatgctgt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ggtcactttgaaacctttccagtcaacagtacctgccagcatttcttttcctgatgctgt 768
Query: 598 ggtaaaatacactgacaaatgcaactt 624
|||||||||||||||||||||||||||
Sbjct: 769 ggtaaaatacactgacaaatgcaactt 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1025
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1015
Effective search space: 623210
Effective search space used: 623210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
