Query= MSMg01no122_p14.b1 MSMg01no122_p14.b1 CHROMAT_FILE:
MSMg01no122_p14.b1 PHD_FILE: MSMg01no122_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:03 2005
(559 letters)
>mm_chr9_115634197_115635155
Length = 959
Score = 926 bits (479), Expect = 0.0
Identities = 532/561 (94%), Gaps = 20/561 (3%)
Strand = Plus / Plus
Query: 1 aagaacccaaggttaagatgcccctgctaacttatcttagcttccaccaaactgcccgct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 aagaacccaaggttaagatgcccctgctaacttatcttagcttccaccaaactgcctgct 260
Query: 61 tgttcagaagaaacccc--ctgcagctaactgcttattttagcttctgtcaacttgcttg 118
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttcagaagaacccccgcctgcagctaactgcttattttagcttctgtcaacttgcttg 320
Query: 119 cttgtgtgaagcacacccccaccacacacacacacagactccccctgctgctgctgagca 178
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 cttgtgtgaagcacacccccaccacacacacaca--gactccccctgctgctgctgagca 378
Query: 179 agatggcaggaaatggtggtttctgtttgccttaaaaaaaaaaaaaaaaaaaaaaaaccc 238
|||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 379 agatggtaggaaatggtggtttctgtttgccttaaaaaaaa----------------ccc 422
Query: 239 tgtgctgtgaacactcactgctatacttaggacctgaatacctgagtgtagtcccagatg 298
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 423 tgtgctgtgaacactcagtgctatacttaggacctgaatacccgagtgtagtcccagatg 482
Query: 299 gctggaataaagactttcaattgtttataagcagtgtcagagtggtcatctctggtgtgc 358
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 483 gctggaataaagactttcaattggttataagcagtgtcagagtggtcatctctggtgtgc 542
Query: 359 tccctataacattatccccagtcatgctcacttcaggcaagagagaacatctccatcact 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tccctataacattatccccagtcatgctcacttcaggcaagagagaacatctccatcact 602
Query: 419 tcaaggcacccctcccccatatcaccaaagtgttgatcttagcatgcattaatatgtaga 478
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tcaagggacccctcccccatatcaccaaagtgttgatcttagcatgcattaatatgtaga 662
Query: 479 cgagaaaggaagcaacccaaatatcctccagtgtggaaataattggacatattatggcag 538
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 663 cgaggaaggaagcaacccaaatatccttcagtgtggaaataattggacatattatggcag 722
Query: 539 atcaggaactgttcaggagaa 559
|||||||||||||||||||||
Sbjct: 723 atcaggaactgttcaggagaa 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_p14.g1 MSMg01no122_p14.g1 CHROMAT_FILE:
MSMg01no122_p14.g1 PHD_FILE: MSMg01no122_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:03 2005
(669 letters)
>mm_chr9_115800441_115801509
Length = 1069
Score = 837 bits (433), Expect = 0.0
Identities = 451/457 (98%)
Strand = Plus / Minus
Query: 213 gtctgtggtcatagcagtgtggaaggcaaccacataccatgactttgaaattagcctggg 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 gtctgtggtcatagcagtgtggaaggcaaccacataccatgactttgaaattagcctggg 1010
Query: 273 ctacagagtggggtcttggttcaaaaactaacaaacaaacaaacacttgaagaaagaaag 332
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1009 ctacagagtggggtcttggttcaaaaactaacaaacaaacaaacacaggaagaaagaaag 950
Query: 333 aaacaaagagagaaacaaagaagcaaaaagaaagaatggactaaaggaagaaagaagaaa 392
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 949 aaacaaagagagaaacaaagaagcaaaaagaaagaatggacaaaaggaagaaagaagaaa 890
Query: 393 caggaaaaaggaaaaaaagagtaatatatttcatatattcaaatgagcctagaattttcc 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 caggaaaaaggaaaaaaagagtaatatatttcatatattcaaatgagcctagaattttcc 830
Query: 453 ctaggtaagaagcaataacttattggcattttagatgttttgaatttataaaatatattg 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 ctaggtaagaagcaataacttattggcattttagatgttttgaatttataaaatatattg 770
Query: 513 gctcttatcataacactaaaccacagatgataatgaggaatattacatattactcctgtg 572
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 769 gctcttatcataacactaaaccacagatgataatggggaatattacctattactcctgtg 710
Query: 573 gggaagttgaataatcaaactcaattcccttagtgagtgaggaaagcagtcagcgaggga 632
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 709 gggaagttgaataatcaaactcaattcccttagggagtgaggaaagcagtcagcgaggga 650
Query: 633 acaaaatagctggcattctaaaatgtcaatgggaatc 669
|||||||||||||||||||||||||||||||||||||
Sbjct: 649 acaaaatagctggcattctaaaatgtcaatgggaatc 613
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
