BAC Information

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BAC

Clone NameMSMg01-123A22
Chromosome9 (Build37)
Map Location 68,131,184 - 68,131,518
singlet/doubletsinglet
Overlap genenone
Upstream geneTln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
Downstream geneRora, 9530091C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123A22.T7 (MSMg01no123_a22.b1)MSMg01-123A22.TJ (MSMg01no123_a22.g1)
ACCAG332761AG332762
length1,2471,197
length of high quality
(start - end)
335 (124 - 458)593 (134 - 726)
definitionCHROMAT_FILE: MSMg01no123_a22.b1 PHD_FILE: MSMg01no123_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:14 2005CHROMAT_FILE: MSMg01no123_a22.g1 PHD_FILE: MSMg01no123_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:32:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCCGCACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTTCTCTGTGGTGTGCATTCAAGACAGAAGGGGGTTACAGCATCT
TCAGAGGGTCCCTGTTCCACCCTGAGGCAGCTCACACAGGCATTACCTGG
AACAAAGATGGGCCTCTAGAATCCTACTTCCTTCAGAGAACCGAGATTTA
AATGTTTTCTGCAAATTTGTGACCAAAAGTATCAATTCACATTCCCCACT
CCTTCATCAAATACAGAATGGCATCTTCAGGCAAAGGTTCTATTGTTCTG
TTTATGTTAAAAAATGGGTCCATGGAGGTTAAGTGCGCTACACAGTGGCT
GATAGTGAGGTTCCTGTGGAGTCACTGAGGCCAACCAGGTCTACCCCCTT
GATTCTTCTAAGTTTTATTTATGACTTGAGGTCTGGAGGTTGGTTGTATA
TTCCTTACTAAAAACTCACCACTACATTTGCAGGAGTGCTTGGAGCTGAC
TGAGATATAAAAATGCCTTTGTTCGTCATCCAGATCAGCCTGAAATGGGG
CAGCAGAATTGAAGACCTTGCCCCAAGTGACTGATTTTGTAGATTATTGA
TTTGGGCAGCAGTTTATTTAAACATTAAAACCTTGAATGAAGTAACTTAG
CCCGAAGAAAAATATGTCAAGCCCAGTGCTTGTTAAGGCTCCCTCTCAGC
CTCTGAGGACTTTGTAAACTGTCCAGATGTATTTGTTTTTGGTTTGCGGT
TTGAGTGTCTATATCTCTATCATTTCATATTCCTCCTCCCCCCCTCTTCT
TTCTCTCTCCCTCTCTTCCTCTCATCTCTACTCTCTCCTCCTCCCCTCTA
TTCTCCCCAACTTTCCCTTCCTCTCCATTACTTATCCTTTTCCCTTTTTC
TTCACCCATCTCCCTTTTTGTCCTCCCTTTTCTTCTCCTCCCCTTCTCTC
CCCTCTCCTCCCCTCCCCTTTCTTTCCCCTTCCTCTCCTCTTCTCCATTC
TTCCTCCTCCTCCTCCTCTTTCCTTTCCTCTCTTCTCCTACCCCCCTTTC
CTCTTTCTTCCACTTCCTCTCCGCCTCTCGCTCCTCTTTCTCTACTTCCC
CCTCTCTTCTCCCGTTATCCCCTCCCTCTCTCTTCCCCCCTTCTACATCC
TCATCCTCCTTACTCGTCCTCCTTCTTACCTTCTCTTCTCCTACTTTTCT
CCTCTCTCTCTTTCTCCTATCTCTCCCTCCTCATTTCTCATCTTCCC
CGGAAATTNNNNNNAAATGATCGGATGCTGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAGCCCGACTCCAGAA
AATAGAATAACCCCATTAACTTATGGGGCTCAGAGCTGAACAAAGCATTC
TCACCCGAGGAATACCAAATGGCTGAGAAGCACCTGAAAAAATGTTCAAC
ATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCATC
TCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGC
TGGCGAGGATGTGGAGAAAGAGGAACACTCCTCTATTGTTGGTGGGATTG
CAAGCTTGTACAACCACTCTAGAAATCAGTCTGGCGGTTCCTCAGAAAAT
TGGACATAGTACTACCGGAGGATCCCGAAATACCTCTCCTGGGCATATAT
CCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATTTTCAT
AGCAGCCTTACTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCT
CAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTAC
TACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGAT
GGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGGAACT
CAGACAATATGTACTCACTGATAGCCCTAGAAACTTAAGATACCCAAAAT
ATAAGATACAATTTGCTAAATGCCATGAAACTCCAGAAGAAAGAAGACCA
AAGTGTGGACACTTTGCCCCCTTCCTAAAAATTGGAACAAAACCCCCCAT
GTGAACGAAGTTACCGAAAACCAAATTTTGGAGCCTGTTGACCAAAAAGA
ATGGAACCCATCCTAGGGAATTGGCCCTTATCCCAGCCGAATCCATTCCC
CATAAATCCAGCTTTCCCCAAAGGCTTGAAACACCCCCCTTCCATACCCC
CTAAGCCTAGGAATTTTTTGCCTGAAAAGGGACCCCCAGAATAATAGCCC
CATCTCTCCTTGGGGGAAAAACTCATGGCCCGTGGGGCCCCCTACCCCCA
TACCCTCCGCAAACCTATCCAAAGGCCCTCCCCCCGCTTCACATTCTTAT
TTGTGGGCGGGGGGGTCTTAACCCCCGCGGTCCCTCCCCACACTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_a22.b1 MSMg01no123_a22.b1 CHROMAT_FILE:
MSMg01no123_a22.b1 PHD_FILE: MSMg01no123_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:14 2005
         (335 letters)



>mm_chr9_68130984_68131718
          Length = 735

 Score =  598 bits (309), Expect = e-175
 Identities = 330/337 (97%), Gaps = 4/337 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggcagctcacacaggcattacctggaacaaagatgggcctctagaatcctacttcctt 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaggcagctcacacaggcattagctggaacaaagatgggcctctagaatcctacttcctt 260

                                                                       
Query: 61  cagagaaccgagatttaaatgttttctgcaaatttgtgaccaaa-agtatcaattcacat 119
           ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 261 cagagaaccgagatttaaatgttttctgcaaatttgtga-caaatagtatcaattcacat 319

                                                                       
Query: 120 tccccactccttcatcaaatacagaatggcatcttcaggcaaaggttctattgttctgtt 179
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 t-cccactccttcatcaaatacagaatggcatcttcaggcaaaggttctattgttctgtt 378

                                                                       
Query: 180 tatgttaaa-aaatgggtccatggaggttaagtgcgctacacagtggctgatagtgaggt 238
           ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tatgttaaagaaatgggtccgtggaggttaagtgcgctacacagtggctgatagtgaggt 438

                                                                       
Query: 239 tcctgtggagtcactgaggccaaccaggtctacccccttgattcttctaagttttattta 298
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcctgcggagtcactgaggccaaccaggtctacccccttgattcttctaagttttattta 498

                                                
Query: 299 tgacttgaggtctggaggttggttgtatattccttac 335
           |||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgacttgaggtctggaggttggttgtatattccttac 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)