BAC Information

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BAC

Clone NameMSMg01-123P15
Chromosome9 (Build37)
Map Location 31,933,774 - 31,933,966
singlet/doubletsinglet
Overlap genenone
Upstream geneSt14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622
Downstream geneGrit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123P15.T7 (MSMg01no123_p15.b1)MSMg01-123P15.TJ (MSMg01no123_p15.g1)
ACCAG333448AG333449
length1,1481,283
length of high quality
(start - end)
83 (149 - 231)192 (132 - 323)
definitionCHROMAT_FILE: MSMg01no123_p15.b1 PHD_FILE: MSMg01no123_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:25 2005CHROMAT_FILE: MSMg01no123_p15.g1 PHD_FILE: MSMg01no123_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATGCGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCTAGAAC
CCTTTCTCACATTATTTAAGCTTACAAGCTATTAAAAAAGGATATGAATG
CGTGTTTTGAATACCCCGTGTGCATATGAGTGCAGGGGCCTTGTGGGCCA
GAGGAGTTGGATTCTCTTGGAGCTGAAGTTGTGAACCACCTGATATGCTC
TTAACCTTTGAACAATCTCTCCTGCTCAGAGCATTTACAGAAATTGATGT
CTTCAGAAGGTTAATTTAATGACCATGCACTAATAAACTATGAACTAAAT
AGATTTATGTTTACAGGAATCCCAACAAAAACACGGATGAAATATATGAA
ACTCATGAATAAAATTAATGACTATGTAGACCAGGTCCTGAGAGAATTTT
TTAACAACTGAATCTGTTTCCTATAATAAACTAGATCTAGGGAGAAATTA
TTTTCAGACAGCATAAACTCTGTTCCCGGCTGCTCAAGGATTCCATTCCG
TTAAAAAGCTATAGAGTTTCTATAGAAGCATGCCGGACTTCTGGGGTCTC
CTTTACAGGATGCAGCACGGGCTGAGCATCCCATCCGCTTTAAAACGCAT
TTCAGGACTTCCCATGTGATAGTGCCAAGTGTAAGCAGCTCATAATGTTT
TACCAGACCGATCGCCTAGCCTCTTCCTAATGGTATCTGCCATTCCCACC
ATTCCCGACACTGAAGTACGAGGCACTTGACTTTGGTACCAGCTTGTGCC
TACCCTTTGATTTCCCCCCTAACTCACTGAGTTTCTATGTATCAGCCTAC
GGTGAGGCAACGCCTCTTTTCTTCGGTCTGCTCTTGCAACCCGTCGCGCC
TGTCCCGTCGCTGCCTCCTCTTCCTTCCTTCTTCTTTCTCTCTCCCCCTC
TCCCCCCTCCCCCCTCCCTCTCTTTCCCTCCTTTCTCCCCCATCTCCCTC
TCCCCTTTCTCTCTTTTCCTCCTCTCCTCCTCCCCTCTCCCTTCCCTTTT
CCCTCTTCCTCTTCCCTCTCCCTCCCTTCCTCTCCCCCTCTATCTTCCTT
CTTTCTTCTCCTCTCTCCACCCCTCTTCTTCTCTCTCCCACCTTCTTCCT
CCTTCTCTCCCCCTCTTTCCCCTTTTCCCTTCTCCCACTCTACCTCCA
AAGACTCTNTTAAACGATGTGAGGCTGGGGCGCCGGTXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAAAGGCCCCCCAGAACTTGC
GAGTCAAGGNCCTCCTGCCTTGAAACAACGCAAGTTTGAAACCAGCCAGG
ACTACAAAGAGAAATATTAAAAAGCCAATAGTAGCAGCAACCCTTTATGA
GGCTTGTGTGCTTGTGTGGGGGGGAGGGGGGTCCGCAAACATATTATATT
ACTTATACTATTTAGTATAAAAATATAAAAAAGTACCTCTGGGCATGTGT
ATGGGGGAGTTTCTAAAGTGGGCTGAGTTGTGAAAACACATGTTAAAAAT
GGGCAGCATCATTCTATGGCTGAGGTGTCACCCTGCTGAAAAGGAGAAAG
CAAGCTTACAACTTTAACTGCTGACTGCAGATGCAATGTGACAGCCACCT
TAAGCTCCTGCTTTGTCTTGTCTCCCCCACCATGAACTACCTACCCTTGA
ACAATGAGGCGAGGCAAGGTCTTCATTCCTTATGTTGCTTTCGCTACATA
CTTCGGCAAGGATCAGATATGTAACTCATCCTTAGCTACCGAGCACCTTC
GAGGCCAGACTAAATCAACCCGACTCCCAACGGCCGCCTAACAATAAATC
CTACATCCCCAGACTATCCAATGACAAACACCCTGACTCTCCCTCCATAT
CCCGCCACCCTAGAGACAAAACACCGACCTCTCACGCTCGGCACCACAGA
CTCCTCCGGACCCACCCACCAGCTAGCTAACCCCCTCACCGGCAACCCCA
CTGCGCCCACTACCAAGCACTCCGCACCCACCCCCGTCAACCTCTCCTAC
TCCCCTGTTCCCATCAACTCCCACATGCAACAACTCCCCATTCCCCGCCC
CCCCCATACTTCCCCCCCCCCCCTCAATTTCACACGCCCTCCCCCCCCAC
CTAGCCACACCCCTCCACCCTCGCGCCCACACAGAGCCCAACCCCCACAC
CCAACCTCCCTGGCGCCCCCCCCCCGCGGCCCCCCTCGTTTTCCCCCCCC
CCCGACCTCACACACCCTACTCCCCCCCCCCCTCGGCTGCCCCCATCCCA
CTCCTCTCTAGCTCCCCTCTACTATTTTAATCCCCTTTTTTCTATCCCCT
CTTCCCCACGGAGTCCCACCCTCCCGCTTCCTCTACGGCTCGTCCTTCTC
CCTCTCTCCTGCTCTACATCTCGGCGCCCCATCTCCTCTTACTTCTTTCA
TCACACTTACTTCATCATTCCNTCTATCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_p15.g1 MSMg01no123_p15.g1 CHROMAT_FILE:
MSMg01no123_p15.g1 PHD_FILE: MSMg01no123_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:26 2005
         (192 letters)



>mm_chr9_31933657_31934249
          Length = 593

 Score =  358 bits (185), Expect = e-103
 Identities = 191/193 (98%), Gaps = 1/193 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtttgaaaccagccaggactacaaagagaaatattaaaaagccaatagtagcagcaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aagtttgaaaccagccaggactacaaagagaaatattaaaaagccaatagtagcagcaac 251

                                                                       
Query: 61  cctttatgaggcttgtgtgcttgtgtggggggg-aggggggtccgcaaacatattatatt 119
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 250 cctttatgaggcttgtgtgcttgtgtgggggggaaggggggtccgcaaacatattatatt 191

                                                                       
Query: 120 acttatactatttagtataaaaatataaaaaagtacctctgggcatgtgtatgggggagt 179
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 acttatattatttagtataaaaatataaaaaagtacctctgggcatgtgtatgggggagt 131

                        
Query: 180 ttctaaagtgggc 192
           |||||||||||||
Sbjct: 130 ttctaaagtgggc 118


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 593
Length adjustment: 8
Effective length of query: 184
Effective length of database: 585
Effective search space:   107640
Effective search space used:   107640
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)