BAC Information

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BAC

Clone NameMSMg01-124E04
Chromosome9 (Build37)
Map Location 79,009,375 - 79,010,155
singlet/doubletsinglet
Overlap genenone
Upstream geneIck, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
Downstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124E04.T7 (MSMg01no124_e04.b1)MSMg01-124E04.TJ (MSMg01no124_e04.g1)
ACCAG333659AG333660
length1,0951,240
length of high quality
(start - end)		---781 (86 - 866)
definitionCHROMAT_FILE: MSMg01no124_e04.b1 PHD_FILE: MSMg01no124_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:07 2005CHROMAT_FILE: MSMg01no124_e04.g1 PHD_FILE: MSMg01no124_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTTTTTTTTTAATTGGCTCATGATCTCTTGGGATACCCCTATTTCTTT
TCTCTTCTATCCTTTTCTCATAACCTGTACATCATTTTTAATTCACTTTT
GTTTTTTTTTGTCCTAGTTTGTCTATCCTTTCTGTCTACCTCTATTCCTT
AAATTCTCCCTTTTAGTTGTATTTAATTGTTATTCTTTTCAAAAACCTTT
TATCACTTTCCCCTTTCCTATTCCCCTTTCTTCTTATCCTCTCTTTTCCC
CCCTTCTTCTTTCCTCCTTCCCCCTTCGTTTAATCCCTTCTTCCCCCCCT
TCTCTCCCTCAAAAACGTTTCTTCTCCCTCTCTTCTTTATTTTTTTCCTT
TCTTCTCCTATCCTTCTTTTTTCCTCTCCACCCTTTTTCCTCCTCTCCCT
CTCTCTTCTCCTGTCCCCCTCCTCACTCCCTCTCTACTCTTCCTCCTCCT
CTCCCTTTTTTTTTCCTCTTTTCCTCTCTCTTTCCCCCTTTTTCTTTATC
CTTTTTTCTCTTCTTTCTCTTCCTTTCTCCTTCTTCTTCTCTTCCTTTTT
TACTTTTACCCTCCTCCCCTTTTTTTTTTTCCTTTCTATCTCCTCCTTTT
TCTTATTTTTATCCCTCTTTCTTCTCCTATTTTTACTCCTTCCTCCTCTC
CTCTTCTCCCTCTTCCTTTCTCTCTTCTCTCTTCTTCTTCCTCTTTCCTC
TTTTCCTCTTTCTTCCTTCAACTTCTCCCTTCCTTTTTTTCCCCTTCCCC
TTACTTCAATATTTTTTTTTTTTTTCCCTATTTCTTTTTCTTCTTCTCTC
TTTTTCTCTTTCTTCTTTTCCTTCCCCTCTTTCCTTTTTCTTTTTTTCTC
TCTCTCCTTCCTTCTTCCTTCTTTTATTCCTTTCCTTTTTCTCTCCTCTT
CCTCTTTTTTTCTCCTTCTCTCTCCTCTCTTTCCTTCCTTTTCTTTCTAC
TCTCCTCCCCTTTCTAACCCATTCCCTTCTTCCTATCTCTTCCCTTTCCT
CCTCCCCTCTCTCCCCTACTTCTACCTTCTTCTCCCCTCTCTCTCTTCTC
TTCTTTCTTCTCTTCTTTTTCTCTTCCTTTCCTCCCTCTCTTATT

CCTTCTTNTTTNTATTCAAGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTAAGGAAATACTTTAAAGT
ACTGTCATAACCATGATGACTTCAAATTACGTTTTAGTGGTAAATATTTT
CTAGACATTTCCAGAAAGAATAACTATGACATGAATGTTCATTATCTAGA
GAATTATCTCAAATTGAAAATATGCAATCATGCACAAAAAATGCTTCAAA
GAAACTTGTCTCCAGGTAATTTTGATATTGTATGAACGAAATGGAATGTA
ATGAGACATACTAAGCATTACTAACACCTTACTAGGTTATATAAACTCTT
ATAAAACCACGGTCATATAGACTCTGTCATCAATATGTGACATATGACTA
TATAAATAAGGTGTTTCATTGTTCACCATGGTTTATTAGAATCAAATGAT
CATAGTAATTATTGACAACATTATCTTATGCCCTATAATTTTTTGTTAGT
AAAAAATGGTATCCAAATAACTAGGCAGGATAAACAAGCCAAAGTAATCA
TTCTCTTAAATATTTCCCTTAACGTGCTTTTTTATTAAATAACTAATAGA
TAACATGAACTATAATTTTTGGCAAATTAAGGCCAAATAATGAAATATAT
AATCTTGTATATAATGATTACTAAATTTTTAGAAACATGGTATTTTAGAT
AAATTTGAATGAAGCAGAATATTCCTGTGGATTCTGGTGAGATGTTGGCA
TGGTTAACATAACTATAAACATAGACGGTTGCATGGACACAAAAATAGGA
GCTGAGATCTGGCTTGAATGACATCACAGTCACTCATTGAAAGCATGTGG
AAATGTGGGGAAACGTTCATCTCTAAGGTAAACAAACAAGAGAACAGAGC
GGAGTTTTCTGAACGACACTAGAAACCCAGTACCAAAAAATAAAGCTTTA
TTAAGAAAAAGAAGGGAATGAATATTGGAATTATACTTTATTAGCATAAA
GCCTTTATTCTTCCTACTGAACAGAGGTGTCCTTTGTGGAACAGGTAACT
TCCCTTATATAGGTTTACCCCCCACCAAGTATTGTGTTTTTTTTTTTCCC
CATTGTAAAGTGTGGGGTGTTGTGTGTTTTTTATTTTTTTCATTCATCCC
TTCCCCCCTTTTCCTTTTCTATTTATTCTTCCCTTTCCTTCCTTCTTTTC
TTAATTTACTTCTACTTCTTATTCCTCATTTTCTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_e04.g1 MSMg01no124_e04.g1 CHROMAT_FILE:
MSMg01no124_e04.g1 PHD_FILE: MSMg01no124_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:07 2005
         (781 letters)



>mm_chr9_79009175_79010355
          Length = 1181

 Score = 1448 bits (749), Expect = 0.0
 Identities = 773/781 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaatactttaaagtactgtcataaccatgatgacttcaaattacgttttagtggtaaat 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 981 gaaatactttaaagtactgtcataaccatgatgaattcaaattacgttttagtggtaaat 922

                                                                       
Query: 61  attttctagacatttccagaaagaataactatgacatgaatgttcattatctagagaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 attttctagacatttccagaaagaataactatgacatgaatgttcattatctagagaatt 862

                                                                       
Query: 121 atctcaaattgaaaatatgcaatcatgcacaaaaaatgcttcaaagaaacttgtctccag 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 861 atctcaaattgaaaatatgcaatcatgcacaaaaaatgcttctaagaaacttgtctccag 802

                                                                       
Query: 181 gtaattttgatattgtatgaacgaaatggaatgtaatgagacatactaagcattactaac 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtaattttgatattgtatgaatgaaatggaatgtaatgagacatactaagcattactaac 742

                                                                       
Query: 241 accttactaggttatataaactcttataaaaccacggtcatatagactctgtcatcaata 300
           |||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||
Sbjct: 741 accttactaggttatatatactcttataaaaccgcagtcatatagactctgtcatcaata 682

                                                                       
Query: 301 tgtgacatatgactatataaataaggtgtttcattgttcaccatggtttattagaatcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgacatatgactatataaataaggtgtttcattgttcaccatggtttattagaatcaa 622

                                                                       
Query: 361 atgatcatagtaattattgacaacattatcttatgccctataattttttgttagtaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgatcatagtaattattgacaacattatcttatgccctataattttttgttagtaaaaa 562

                                                                       
Query: 421 atggtatccaaataactaggcaggataaacaagccaaagtaatcattctcttaaatattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atggtatccaaataactaggcaggataaacaagccaaagtaatcattctcttaaatattt 502

                                                                       
Query: 481 cccttaacgtgcttttttattaaataactaatagataacatgaactataatttttggcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccttaacgtgcttttttattaaataactaatagataacatgaactataatttttggcaa 442

                                                                       
Query: 541 attaaggccaaataatgaaatatataatcttgtatataatgattactaaatttttagaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaaggccaaataatgaaatatataatcttgtatataatgattactaaatttttagaaa 382

                                                                       
Query: 601 catggtattttagataaatttgaatgaagcagaatattcctgtggattctggtgagatgt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catggtattttagataaatttgaatgaagcagaatattcctgtggattctggtgagatgt 322

                                                                       
Query: 661 tggcatggttaacataactataaacatagacggttgcatggacacaaaaataggagctga 720
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcatggttaatataactataaacatagacggttgcatggacacaaaaataggagctga 262

                                                                       
Query: 721 gatctggcttgaatgacatcacagtcactcattgaaagcatgtggaaatgtggggaaacg 780
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatctggcttgaatgacatcatagtcactcattgaaagcatgtggaaatgtggggaaacg 202

            
Query: 781 t 781
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 781
Length of database: 1181
Length adjustment: 10
Effective length of query: 771
Effective length of database: 1171
Effective search space:   902841
Effective search space used:   902841
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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