BAC Information

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BAC

Clone NameMSMg01-124K08
Chromosome9 (Build37)
Map Location 118,838,802 - 119,000,485
singlet/doubletdoublet
Overlap geneCtdspl, Vill, Plcd1
Upstream geneLOC100039681, Azi2, 2010110K16Rik, Eomes, Golga4, Itga9, LOC100039768
Downstream geneDlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124K08.T7 (MSMg01no124_k08.b1)MSMg01-124K08.TJ (MSMg01no124_k08.g1)
ACCAG333946AG333947
length1,3021,315
length of high quality
(start - end)
368 (31 - 398)663 (80 - 742)
definitionCHROMAT_FILE: MSMg01no124_k08.b1 PHD_FILE: MSMg01no124_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:01 2005CHROMAT_FILE: MSMg01no124_k08.g1 PHD_FILE: MSMg01no124_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:36:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,838,802 - 118,839,154)(118,999,833 - 119,000,485)
sequence
NNCCGGCTATGGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATT
CCCTCTCTACGCAGCATGTGTGGAGGCACACCGGTGGCTCAGAGACGAGT
GTCACTGTCATTAGCCTGTGGCTCTGGCTCATTGCTTCCAGCTGTGTTTG
ATTGGATTGATAGTGTGAGGCTACAGAGAACAGTCCCCCGCAGTGAACTG
TTCCTGCCTTGCTCTCACACAGCCCTTAGGAAAAGAGACCAGAGATGGGA
ACCAGAAAGTCGTAGAAGAGGAAAACGGAACGACTTCTGAGTCTGTGAGT
TACCATTCCCATGTCACTTCTAAGCACTTCAGTGACTTCCGGTGTCCAAA
GCGGACAGATGTTTGGAAAATGGCTCCTCCCAGTAGACTTGGGAGAAGAT
TTTTAGAAATAGTACAAACTTTTCGTGTTGTTAGGATTTATTTATTTTTA
TTTTTTTTTCTCCCCCCCCCCCTTTGCCGGCATGTCTCATGTATAAAAAT
GGGACCTGTAGAGGCCAGAAGAGGCTGTTTGGTTCCCTGGAACTGGGGTT
ACAGATGGTTGTGAACCACCATATGGGTGCTGGAACTGAACCCCAGGCCT
TTCTAGGAACAGTCAGTGTTCTTAACCATTTATCCCTCTCTCCATCCCCA
GGAGTGCAAGCGTTCTAAAGAGTAATCTTAGTACTTAATGCGTGAGCTGA
TACTTTTGGCCGCAAGTATCATAAAACCCCCCTTCATGCAGCCTGAGCCA
GGCTCCTGTAGATTGACTGCTCTGGCTCTCCTTGCACTGCCCCGATGTTT
TGCTAACCCAGCAGTTCTCTTGGCTTCTCCACCCCCCATGTTGCTTCCTG
TCTGAAACCTCTCTATTTCCCTTGTCCTCCTCCCGGCGCAAAATGACACC
GAGTCCGGTCAATCTTCCCCCCTCATATCTATAAAGTAGACCCTTCCCTA
GTATCTCTCCATAACTCTTTGTTCCTGTTTAATTTTCCCACAACTGGGTT
CCTATTCCCTCCCCCCCCCCTCAACTTAACATTTTCTATTTCTACCTCCC
CCGCTATGTTTTCTCCCCCTCCTCTTAAATAATCTCGCTANTTATATTGT
CCTTATCTTTGTTTCTTACTTTTTCCCTTTTTCTCTCATTCTTCTTTTTC
ATTCCTTTACTTCCCCCCTCTTATTTTTTTCTGACATTACAATCTCCTCC
TATGATTCTACTCAATCCTCCTCTCTCACTTTTCCTTTATAATCTACCAC
TTCCATGTCTTTTTCTCCTATCTTCTCTCCTCTTCTCTTATTTTTCTCTT
TT
CTTTTTTTAACATTGGAGCATGGGGCGCCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTCTTAGGAGAAGTCTCTCTCTCTCTCTCT
CTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCACTCACACACACACA
CACACACACACACACACGCTCGTGTGCCCACAAGCCGGGAGTTGTCTGGC
AGAGTGGCTAGATGATGGGACAGAACCAAGGGCAAATGTAGCTGGATTTG
GATGCAAGGACCAAGGGGCTCTTTCTACCACTGAAGCCTGCTAATTGATA
CTATAGTTGCCATCTTCCCCTCCTACACCACCCCTCTCTATTTTAACTAA
GCCTGGACTGGCATCCCCAGCAGGGCCCTGAAAAGACATTACTTCCCAGG
ACCTTTTCCTTCACTGAAGACAGTCACCACACTGACTTGCCCTGCACCTG
GCCCATCTGCCCTATTGCCCAAGCCGGCAGTCTGTAAAAGGGACAGGGAG
CCCCTAGAGCCACAGGCTCCAACTCTAGCTTTGCCATTTGCTGTGTAGCT
GTGGCCTTTCTGAGCCCTTTTCTCATCCATGGGATTGCAATATATTTTTC
CACAGAGGATGTTGCCAGGATAAAATACTAGTGGGGGCTGGGGACTTAAC
TTCAGCAAAGTAGCTCGGCGGGCACACATTCCTGGGTTTAGTCCGCACCA
CCTTATAAGCCTGGCACAGTGGCACAAGATTACAATTTTAGCATTTGGAA
GTTGCCAACCATTAGTTCAAGAAGTAGCAGCCCTCAGCGGCACAGGGTGT
TGGAGGTCAGCCTATGACACACAAGATCCTCTCTCAGACATACAAAATCA
TTGTGCTTGGGAGTTCAAATTCCCTTCGGAAGTCCAGAGACCCTAATAAA
AGTGAACCACAGAATGTAAGTGTGCCCCTGCCCCCCCATGCAGGGAAGTT
AATGCCTCCAAAGCTATCTGCCTTTGAAGGGCTCTGGGTCCCCAGGAAAC
ACACATCATTGGCCCCAGGTTGCTAACCCTCTTTTGTGTTTAAGGTTCCT
CCAATGATTAAGAAACCCTTCTCTAAATCTGCCTTCCGGTTCTTTGTGAT
TCCTTCTCCCACTCTGTTGTCTGATTGGAAGTCATTTTACATGTTTTCTG
TTTTAGCATACAATACACTCACTTCTATCTCTCTTATTCTAACTATACTT
TCCATTTTTCCCCCCTCTTTTCTTGATNCACCATTTCTTTTTTATCCTTC
TTTCCTTCATCTAGCTTTTCTGTCTCCACTAGCTTATCCTTACTTCTTCA
TTCCTCATCTTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_k08.b1 MSMg01no124_k08.b1 CHROMAT_FILE:
MSMg01no124_k08.b1 PHD_FILE: MSMg01no124_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:01 2005
         (368 letters)



>mm_chr9_118838587_118839354
          Length = 768

 Score =  659 bits (341), Expect = 0.0
 Identities = 350/353 (99%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattccctctctacgcagcatgtgtggaggcacaccggtggctcagagacgagtgtcac 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattccctctctacgcagcatgtgtggaggcacaccggtggctcagagacgagtgtcac 275

                                                                       
Query: 76  tgtcattagcctgtggctctggctcattgcttccagctgtgtttgattggattgatagtg 135
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 276 tgtcattagcctgtggctctggcttattgcttccagctgtgtttgattggattgatagtg 335

                                                                       
Query: 136 tgaggctacagagaacagtcccccgcagtgaactgttcctgccttgctctcacacagccc 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgaggctacagagaacagtcccccgcagtgaactgttcctgccttgctctcacacagccc 395

                                                                       
Query: 196 ttaggaaaagagaccagagatgggaaccagaaagtcgtagaagaggaaaacggaacgact 255
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 396 ttaggaaaagagaccagagatgggaaccagaaagtcctagaagaggaaaacggaacgact 455

                                                                       
Query: 256 tctgagtctgtgagttaccattcccatgtcacttctaagcacttcagtgacttccggtgt 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tctgagtctgtgagttaccattcccatgtcacttctaagcacttcagtgacttccggtgt 515

                                                                
Query: 316 ccaaagcggacagatgtttggaaaatggctcctcccagtagacttgggagaag 368
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 516 ccaaagcggacagatgtttggaaaatgggtcctcccagtagacttgggagaag 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no124_k08.g1 MSMg01no124_k08.g1 CHROMAT_FILE:
MSMg01no124_k08.g1 PHD_FILE: MSMg01no124_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:36:01 2005
         (663 letters)



>mm_chr9_118999786_119000848
          Length = 1063

 Score = 1170 bits (605), Expect = 0.0
 Identities = 641/653 (98%)
 Strand = Plus / Minus

                                                                       
Query: 11  tctctctctctctctctctctccctctctctctctctctctctctcactcacacacacac 70
           |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 700 tctctctctctctctctctctctctctctctctctctctctctctcacacacacacacac 641

                                                                       
Query: 71  acacacacacacacacacgctcgtgtgcccacaagccgggagttgtctggcagagtggct 130
           |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
Sbjct: 640 acacacacacacacacacgctcgtgtgcccacaagctgggaattgtctggcagagtggtt 581

                                                                       
Query: 131 agatgatgggacagaaccaagggcaaatgtagctggatttggatgcaaggaccaaggggc 190
           |||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 580 agatgatgggacagaatcaagggcaaatgtagctggatttgtatgcacggaccaaggggc 521

                                                                       
Query: 191 tctttctaccactgaagcctgctaattgatactatagttgccatcttcccctcctacacc 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tctttctaccactgaagcctgctaattgatactatagttgccatcttcccctcctacacc 461

                                                                       
Query: 251 acccctctctattttaactaagcctggactggcatccccagcagggccctgaaaagacat 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 acccctctctattttaactaagcctggactggcatccccagcagggccctgaaaagacat 401

                                                                       
Query: 311 tacttcccaggaccttttccttcactgaagacagtcaccacactgacttgccctgcacct 370
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 400 tacttcccaggaccttttccttcactaaagacagtcaccacactgacttgccctgcacct 341

                                                                       
Query: 371 ggcccatctgccctattgcccaagccggcagtctgtaaaagggacagggagcccctagag 430
           |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ggcccacctgccctattgcccgagccggcagtctgtaaaagggacagggagcccctagag 281

                                                                       
Query: 431 ccacaggctccaactctagctttgccatttgctgtgtagctgtggcctttctgagccctt 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ccacaggctccaactctagctttgccatttgctgtgtagctgtggcctttctgagccctt 221

                                                                       
Query: 491 ttctcatccatgggattgcaatatatttttccacagaggatgttgccaggataaaatact 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ttctcatccatgggattgcaatatatttttccacagaggatgttgccaggataaaatact 161

                                                                       
Query: 551 agtgggggctggggacttaacttcagcaaagtagctcggcgggcacacattcctgggttt 610
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 agtgggggctggggacttaacttcagcaaagtagctcggcgggcacacattcctgggttt 101

                                                                
Query: 611 agtccgcaccaccttataagcctggcacagtggcacaagattacaattttagc 663
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 agtccgcagcaccttataagcctggcacagtggcacaagattacaattttagc 48


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 14
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)