BAC Information

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BAC

Clone NameMSMg01-125N13
Chromosome9 (Build37)
Map Location 51,961,683 - 51,962,267
singlet/doubletsinglet
Overlap geneZc3h12c
Upstream geneLOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik
Downstream geneLOC100042876, AI593442, Gm1715, Ddx10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125N13.T7 (MSMg01no125_n13.b1)MSMg01-125N13.TJ (MSMg01no125_n13.g1)
ACCAG334827
length734733
length of high quality
(start - end)
---585 (70 - 654)
definitionCHROMAT_FILE: MSMg01no125_n13.b1 PHD_FILE: MSMg01no125_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:01 2005CHROMAT_FILE: MSMg01no125_n13.g1 PHD_FILE: MSMg01no125_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTACAATCCAGATGGAAACAAAGCCAATGG
AAACAGCCTGCTGGGACACAGTGCAGAGCTCAGATTCCAAACATACCCTC
TGCTCCCTTCTTCTCACTGTTAACCATGGCTGGCAGGTAGAGAAGTAGGT
TAAAATGATCAAGACACATCTTCCTTTCAAGCCATGAATAAATAAATAAG
CACCAAAAACCAATGCTGGCCTGAAATGTAAGTGAATAAAATGATTAATA
AAAAATACAGTACTGTTTTATAATAAAAACATCTTCCCCAATCCATACCA
AGAATGAAGTATCAAAAATCTTTGGTATAAGACTTATTTGATCCTAAAAG
TAACCCCAATATATCAACAGCAAATAAAAGTAAAGAGAACAAAGGGAGTA
AGAAATAAGGTGCAGGGGTTTATAGCTGTTATCCGAGCACTGGGAAGGGA
AAACGCTGAGCTCACGGCTGACCTGGGCGTCAGAATGAGATGGTGTCTCA
AAGACAAGCACACAACACAATAAGAAACAACCAGTGTGTATTTTTAAAAA
TTTTTATCCACAGGAAAAACAAACTTTTAAAGAAAAATAAATTTTATAAA
AAGCTTACGGGCTTACACTGGCTAATGTTATGTGCACCTGATACAGGCTT
TAAAGTACTTGGTGAGAGGGGAACCTCCTTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_n13.g1 MSMg01no125_n13.g1 CHROMAT_FILE:
MSMg01no125_n13.g1 PHD_FILE: MSMg01no125_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:01 2005
         (585 letters)



>mm_chr9_51961483_51962467
          Length = 985

 Score = 1131 bits (585), Expect = 0.0
 Identities = 585/585 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attacaatccagatggaaacaaagccaatggaaacagcctgctgggacacagtgcagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attacaatccagatggaaacaaagccaatggaaacagcctgctgggacacagtgcagagc 260

                                                                       
Query: 61  tcagattccaaacataccctctgctcccttcttctcactgttaaccatggctggcaggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagattccaaacataccctctgctcccttcttctcactgttaaccatggctggcaggta 320

                                                                       
Query: 121 gagaagtaggttaaaatgatcaagacacatcttcctttcaagccatgaataaataaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagaagtaggttaaaatgatcaagacacatcttcctttcaagccatgaataaataaataa 380

                                                                       
Query: 181 gcaccaaaaaccaatgctggcctgaaatgtaagtgaataaaatgattaataaaaaataca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaccaaaaaccaatgctggcctgaaatgtaagtgaataaaatgattaataaaaaataca 440

                                                                       
Query: 241 gtactgttttataataaaaacatcttccccaatccataccaagaatgaagtatcaaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtactgttttataataaaaacatcttccccaatccataccaagaatgaagtatcaaaaat 500

                                                                       
Query: 301 ctttggtataagacttatttgatcctaaaagtaaccccaatatatcaacagcaaataaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttggtataagacttatttgatcctaaaagtaaccccaatatatcaacagcaaataaaa 560

                                                                       
Query: 361 gtaaagagaacaaagggagtaagaaataaggtgcaggggtttatagctgttatccgagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaaagagaacaaagggagtaagaaataaggtgcaggggtttatagctgttatccgagca 620

                                                                       
Query: 421 ctgggaagggaaaacgctgagctcacggctgacctgggcgtcagaatgagatggtgtctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgggaagggaaaacgctgagctcacggctgacctgggcgtcagaatgagatggtgtctc 680

                                                                       
Query: 481 aaagacaagcacacaacacaataagaaacaaccagtgtgtatttttaaaaatttttatcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagacaagcacacaacacaataagaaacaaccagtgtgtatttttaaaaatttttatcc 740

                                                        
Query: 541 acaggaaaaacaaacttttaaagaaaaataaattttataaaaagc 585
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaggaaaaacaaacttttaaagaaaaataaattttataaaaagc 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)