BAC Information

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BAC

Clone NameMSMg01-126G17
Chromosome9 (Build37)
Map Location 62,022,601 - 62,022,974
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040481, Tle3, LOC100039851, Rplp1, Kif23, Paqr5, Glce
Downstream geneSpesp1, LOC100039897, Anp32a, Coro2b, Itga11, EG665478, Fem1b, Cln6, Calml4, Pias1, LOC100039976, Ppia-ps9_818.1, Lbxcor1, Map2k5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126G17.T7 (MSMg01no126_g17.b1)MSMg01-126G17.TJ (MSMg01no126_g17.g1)
ACCAG335238AG335239
length708714
length of high quality
(start - end)
372 (62 - 433)248 (68 - 315)
definitionCHROMAT_FILE: MSMg01no126_g17.b1 PHD_FILE: MSMg01no126_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:48 2005CHROMAT_FILE: MSMg01no126_g17.g1 PHD_FILE: MSMg01no126_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTTGCGGCGCTAAACGACTCCTATTTCGAGAAGAGCGCGGAATTCAG
CGTATTTCGCCAATGCTTGACCTGTAGTAAATACTCAATAAATGTGAGCC
GCTGTGACTTGAAGAGCAGGCTTGATCAGTTAGCTCTGGAAACCCTGCCA
AGTCTGTGTTCATGCCTCGTTCACCTGCATTTCCTCCTTCCAAGAATTTA
CTGAGAGGAGAAAAAATGAGCAGATTTTAACCTCATTTCCTTTTATGGCT
TCTTCTCATCGCCCCCAGATTACTGTGTGAACTACAGACTTTATTTTTAG
CTACTTCCATGGTCTCTTGTACCAGACATCCTATAAGTCTGCTAGGGCTG
ACCGAAGGGCTGCTCACACGGAGCTGCCTGCTCGCCTTCAATGCTTCAGG
CTTAAAACCGATTGCCCAGGGACCTTTGATCCGCAGCGATGGTATCCGTG
AGCTGAATCAAGCTCAAGATGAATTAGCTGCTTACATGAATTGAACCCAG
AGGAATCTGATAAACACGCAATATTGAGTGCCTAAGAAGAGCCCTCTTCC
TTCAGATGCACGTTGTGCGGATGCTGCATTGTTTGCCCAGCTTCTGTTCT
TATTGGCTAAATTGGATGCCCAAATTAAAATTCACTATATAATCCCCAAG
TTAGCCTTTCTCCTGCTAGACACTGGTCCTGACATGCATTATCTAGGCCT
GCTCTTTT
ATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGTCTCGAACTCAGAA
ATCCTCCTGCTTCTGCCTCCCAAGTACTGGCATTAAAAGCATGTGCCACC
ATTGCCTGGCTCAGAACCTACTTTTAATAAGGGTTCTTAAATGCTTTAGC
CTCCCTTCTAGCCCACCACTCACCAGAGGCAGTGGAAAGGGAAGGCTGAT
AAAGCAAAGGAGGAAATGGACCTGTTTAGAAAGCGTTGTTTGGAGTGAAT
CCAGTCTGTGTTGTCTGGATGTCAATAGTTTAGATGACTCAGCAACATGC
TGGTCAATCCAGCATAAACTGCAAGGACAATCATCCCGAGTCTGAGGAAG
CTGCAGGGACACCACAAGTTCTTTGGTGCATTTCTCTGTATGAAGTCACA
ACAAACAATGATCAGCAAAGATGGTTAAGGCGTACCGATACCATATAGCC
TGTTGAGCTATCCTTCATACCCTTTCTAAATATCACGCGTTCTCTCACGC
ATCTGCTCTAGCACAACACCCCATGCCCTTTTTTCAGGCTGTTTTCCGAC
AAACCCCCCCTGTCCGTTCCCATTTCAATATCCTCCTGTGCGTGGGCCTC
TATACTCAATCCTTTCGCCCAATACTTACTTTTCCCGAACACCTTCTATT
GATTCCTCTTGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_g17.b1 MSMg01no126_g17.b1 CHROMAT_FILE:
MSMg01no126_g17.b1 PHD_FILE: MSMg01no126_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:48 2005
         (372 letters)



>mm_chr9_62022401_62023176
          Length = 776

 Score =  665 bits (344), Expect = 0.0
 Identities = 365/374 (97%), Gaps = 4/374 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgcttgacctgtagtaaatactcaataaatgtgagccgctgtgactt----gaagagc 56
           |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 201 aatgcttgacctgtagtaaatactcaataaatgtgagccgctgtgacttataagaagagc 260

                                                                       
Query: 57  aggcttgatcagttagctctggaaaccctgccaagtctgtgttcatgcctcgttcacctg 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcttgatcagttagctctggaaaccctgccaagtctgtgttcatgcctcgttcacctg 320

                                                                       
Query: 117 catttcctccttccaagaatttactgagaggagaaaaaatgagcagattttaacctcatt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catttcctccttccaagaatttactgagaggagaaaaaatgagcagattttaacctcatt 380

                                                                       
Query: 177 tccttttatggcttcttctcatcgcccccagattactgtgtgaactacagactttatttt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccttttatggcttcttctcatcgcccccagattactgtgtgaactacagactttatttt 440

                                                                       
Query: 237 tagctacttccatggtctcttgtaccagacatcctataagtctgctagggctgaccgaag 296
           ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 tagctacttccatggtcacttgtaccagacatcctagaagtctgctagggctgaccgaag 500

                                                                       
Query: 297 ggctgctcacacggagctgcctgctcgccttcaatgcttcaggcttaaaaccgattgccc 356
           |||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct: 501 ggctgctcacacggagctgcctgctcgccttcaatgcttcagacttaaagctgattgccc 560

                         
Query: 357 agggacctttgatc 370
           ||||||||||||||
Sbjct: 561 agggacctttgatc 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 776
Length adjustment: 9
Effective length of query: 363
Effective length of database: 767
Effective search space:   278421
Effective search space used:   278421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)