Query= MSMg01no126_h17.b1 MSMg01no126_h17.b1 CHROMAT_FILE:
MSMg01no126_h17.b1 PHD_FILE: MSMg01no126_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:53 2005
(277 letters)
>mm_chr9_79775679_79776356
Length = 678
Score = 468 bits (242), Expect = e-136
Identities = 266/274 (97%), Gaps = 1/274 (0%)
Strand = Plus / Minus
Query: 5 gaattcagagagtt-gacgcatttgtcagaggttatttggggagaaggtaagattggccg 63
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaattcagagagttggaggcatttgtcagaggttatttggggagaaggtaagattggccg 419
Query: 64 gacaagttggtcagctgcctgctcaccacccaaggagaatcagctccagctttcacaatg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gacaagttggtcagctgcctgctcaccacccaaggagaatcagctccagctttcacaatg 359
Query: 124 aacttgttcagaatttatctagtttgttattaaccttctctttgccttttgggttttctt 183
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 358 aactcgttcagaatttatctagttcgttattaaccttctctttgccttttgggttttcct 299
Query: 184 ataatttctggcaggtcttataaattcttcatcttctgttccatttaaaattcttacttg 243
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ataatttctggcaaatcttataaattcttcatcttctgttccatttaaaattcttacttg 239
Query: 244 ttgttattgtatatgtatgtgtgtgatctgtagc 277
|| |||||||||||||||||||||||||||||||
Sbjct: 238 ttattattgtatatgtatgtgtgtgatctgtagc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 678
Length adjustment: 9
Effective length of query: 268
Effective length of database: 669
Effective search space: 179292
Effective search space used: 179292
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no126_h17.g1 MSMg01no126_h17.g1 CHROMAT_FILE:
MSMg01no126_h17.g1 PHD_FILE: MSMg01no126_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:53 2005
(544 letters)
>mm_chr9_79615564_79616507
Length = 944
Score = 971 bits (502), Expect = 0.0
Identities = 534/545 (97%), Gaps = 2/545 (0%)
Strand = Plus / Plus
Query: 1 cataaaggggaggtgacagaactccacagtgaactcacagaactatgcagcagactgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataaaggggaggtgacagaactccacagtgaactcacagaactatgcagcagactgaga 260
Query: 61 agggagcatctaagatcagattcatcaaaagcagcagtggaaagctgctgttaacctaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggagcatctaagatcagattcatcaaaagcagcagtggaaagctgctgttaacctaaa 320
Query: 121 attgtatgtgtagtcaagctattagtgaaatatgaaggtcaaaaattatttttatgttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgtatgtgtagtcaagctattagtgaaatatgaaggtcaaaaattatttttatgttat 380
Query: 181 atcttaactaaaaaatatttattttatgtgtttagtgtgaatctctggggatgaaaggaa 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 atcttaactaaaaaatatttattttatgtgtttattgtgaatctctggggatgaaaggaa 440
Query: 241 gcttggtgc-aaaggttattctttttcaacataaaagcttgagaataactacttgacttt 299
|||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 gcttgg-gccaaaggttattctttttcaacataaaggcttgagaataactacttgacttt 499
Query: 300 gaaaactgcacacacctttatttatattacatgcaaataacaccacccccncatttggtt 359
||||||||||||||||||||||||||||||||||||||||||||| | | ||||| |||
Sbjct: 500 gaaaactgcacacacctttatttatattacatgcaaataacaccatcttctcattttgtt 559
Query: 360 ttagataatatatttattttaaaatttaaaatgacattaggaaaaatgtgcttttcatat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 560 ttagataatatatttattttaaaatttaaaatgacattaggaaaaatgtgcttttcacat 619
Query: 420 ttactaactgatgggcacatgggctaaactggactttaaaataatttactagctcattcc 479
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttactaactgatgggcacatgagctaaactggactttaaaataatttactagctcattcc 679
Query: 480 ctctacaacagacatttatacatcaaaactttgtaactgcagcactttacccccttcacg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctctacaacagacatttatacatcaaaactttgtaactgcagcactttacccccttcacg 739
Query: 540 cttga 544
|||||
Sbjct: 740 cttga 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
