BAC Information

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BAC

Clone NameMSMg01-126K10
Chromosome9 (Build37)
Map Location 15,848,973 - 16,005,844
singlet/doubletdoublet
Overlap geneFat3
Upstream genePanx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612, Ccdc67, LOC665461, LOC330891, Slc36a4, Mtnr1b
Downstream geneEG434373, LOC100040074
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126K10.T7 (MSMg01no126_k10.b1)MSMg01-126K10.TJ (MSMg01no126_k10.g1)
ACCAG335410AG335411
length704705
length of high quality
(start - end)
283 (40 - 322)373 (73 - 445)
definitionCHROMAT_FILE: MSMg01no126_k10.b1 PHD_FILE: MSMg01no126_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:07 2005CHROMAT_FILE: MSMg01no126_k10.g1 PHD_FILE: MSMg01no126_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,005,567 - 16,005,844)(15,848,973 - 15,849,345)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXCTATTCAAAGAGGACCGCGGAATTC
ACAAAGACCCAAAAACAATACCCCACATTTGTCATATACTGAGGGGACCT
GTGGGAAAACCTTAGTAGGTAAGAGTGGCCTTGAGTCACAAATGCTCATG
CCAATGGCTTCAGAAGGTACCTGAAGGATTGGCCAACTCTATTCTTCTTT
CCAGTCTCCCCTGGACCTGGTAAGTGTCAGGTAATATAGGAAGCATCCCA
CAGGATCTTGGCTTTCTCCCAGCAGGCACTTGCCATGTTCCGGCAAACAT
TCCTCTGCCTTCTGTTCTGTCAAGCAGGCCCACAACACAGCTATTGCTGA
CTCTATTACGACAAACAGTGGCTCTACCATCCTTAGGCCAAATTTTAACC
TGCAGCACCCCCCAATCTGTCATTTGGAAACAGGTTTTCCAAAAGTTCAC
ATGTACTTACGTTAAGAATATTAAACTGACATCATCCTGAGTTATCCGTG
CGCTTAATCCCGTGCTGCCTAACAGCCCTAACACTTGCTGCCTCTATGAG
TATTTTCAAATGGTGACGTCTAACTAGCTGAGTCCTACTACCTCTTGATC
ACGCATCTTACCGATCACATCCCATTCCCCTCTCACAGTAACCTGCTTGA
TATCTTGATTCTTCGATTTTCGGTTTTTGGAATAATAGCTTGCCCTTTTC
TCTC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTGGTGGTGACTGTAGGAAATGATTGG
ATCATGGGTGCCTTGTCTTCATGAATAGATTCATCTACTGATAGACTCCT
GTATGGGGCATTATTAGGAAGTGAAGGAACTAATAGGAGGTGGAGCCTGG
AGGGGGAGAGTAGCCCATGAGGGCCTTGCCTTGGAAGGGTATGTCCTGTC
CTTTGCTTCTCTGAGTGAGAAGAGTAGCTCTGAGCTCCTTGGCCTTCGCC
ATCAGGGTACTCTGCCTTTTCACACATGCACAGCAATGGCACCAGATAAC
CATCAGGCGAGACCTTTGGAAGCAGGAACTGAAATAAATCTTTACTTTTT
GAAGTTGTTTCTCTCACCTATCTGCTATAGTAAAGTTGAAAACAAAAACA
CTTAATGCAATATTTTAGTAAAGAATTTAAAAAAGAATTATATTGGAATT
CTCATAGTCTGTCATATATTCTTAACATTTGAAACAACTTTTGCAAAGAA
TGGATTTTTTTGTGTATTTATACTACCTCTGAAGTTCACTTTCTGTGAAA
CTAATAGAGGATTCTATCCCTTCACTGTTGAATCACATGAACTTCAGAAA
CCTTTCAATTTAAAATGAATAACTTCCCCTAAAGGATAATTCTTAAAGGC
TTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_k10.b1 MSMg01no126_k10.b1 CHROMAT_FILE:
MSMg01no126_k10.b1 PHD_FILE: MSMg01no126_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:07 2005
         (283 letters)



>mm_chr9_16005362_16006044
          Length = 683

 Score =  460 bits (238), Expect = e-134
 Identities = 268/278 (96%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcacaaagacccaaaaacaataccccacatttgtcatatactgaggggacctgtgg 65
           ||||||||||||||  ||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 483 gaattcacaaagacataaaaaaaataccccaaatttgtcatatactgaggggacctgtgg 424

                                                                       
Query: 66  gaaaaccttagtaggtaagagtggccttgagtcacaaatgctcatgccaatggcttcaga 125
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gaaaaccttagtaggtaaaagtggccttgagtcacaaatgctcatgccaatggcttcaga 364

                                                                       
Query: 126 aggtacctgaaggattggccaactctattcttctttccagtctcccctggacctggtaag 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 363 aggtacctgaaggattggccaactctattcttctttccagtctcccctggacctggtaat 304

                                                                       
Query: 186 tgtcaggtaatataggaagcatcccacaggatcttggctttctcccagcaggcacttgcc 245
           || |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tggcagggaatacaggaagcatcccacaggatcttggctttctcccagcaggcacttgcc 244

                                                 
Query: 246 atgttccggcaaacattcctctgccttctgttctgtca 283
           |||||||||||||||||||| |||||||||||||||||
Sbjct: 243 atgttccggcaaacattcctttgccttctgttctgtca 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no126_k10.g1 MSMg01no126_k10.g1 CHROMAT_FILE:
MSMg01no126_k10.g1 PHD_FILE: MSMg01no126_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:07 2005
         (373 letters)



>mm_chr9_15848773_15849545
          Length = 773

 Score =  698 bits (361), Expect = 0.0
 Identities = 370/373 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attggtggtgactgtaggaaatgattggatcatgggtgccttgtcttcatgaatagattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attggtggtgactgtaggaaatgattggatcatgggtgccttgtcttcatgaatagattc 260

                                                                       
Query: 61  atctactgatagactcctgtatggggcattattaggaagtgaaggaactaataggaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctactgatagactcctgtatggggcattattaggaagtgaaggaactaataggaggtg 320

                                                                       
Query: 121 gagcctggagggggagagtagcccatgagggccttgccttggaagggtatgtcctgtcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcctggagggggagagtagcccatgagggccttgccttggaagggtatgtcctgtcct 380

                                                                       
Query: 181 ttgcttctctgagtgagaagagtagctctgagctccttggccttcgccatcagggtactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcttctctgagtgagaagagtagctctgagctccttggccttcgccatcagggtactc 440

                                                                       
Query: 241 tgccttttcacacatgcacagcaatggcaccagataaccatcaggcgagacctttggaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgccttttcacacatgcacagcaatggcaccagataaccatcaggcgagacctttggaag 500

                                                                       
Query: 301 caggaactgaaataaatctttactttttgaagttgtttctctcacctatctgctatagta 360
           |||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||
Sbjct: 501 caggaactgaaataaatctttactttttgaagttgtttctcttaagtatctgctatagta 560

                        
Query: 361 aagttgaaaacaa 373
           |||||||||||||
Sbjct: 561 aagttgaaaacaa 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)