BAC Information

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BAC

Clone NameMSMg01-126L18
Chromosome9 (Build37)
Map Location 115,003,979 - 115,004,251
singlet/doubletsinglet
Overlap geneOsbpl10
Upstream geneSusd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8, Gpd1l, LOC100043813
Downstream geneLOC100043812, Stt3b, LOC100039567, LOC670467, EG546164, Gadl1, EG668829, Tgfbr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126L18.T7 (MSMg01no126_l18.b1)MSMg01-126L18.TJ (MSMg01no126_l18.g1)
ACCAG335470AG335471
length734730
length of high quality
(start - end)
---272 (58 - 329)
definitionCHROMAT_FILE: MSMg01no126_l18.b1 PHD_FILE: MSMg01no126_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:14 2005CHROMAT_FILE: MSMg01no126_l18.g1 PHD_FILE: MSMg01no126_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTAAAATTGCGGCCCTAAANGANTCCTANATCGNACCCGCCACGGAAN
NCNNNCTTTTACCCGCACCCGACAGANAANGCANAAAGANNGGGGNNAAA
AGCACANACCCANNAGNCCCCCCAANCANCCNNANAACNNAGAGNNNANG
GCNANNNNGCNGCCAACAGAGGNAGGCAGGGGAGCGCGCGCGCGCGCGCG
CACGACCCGCCCCCCCACGCCCCACACACCCCGACCCCACAGACNCCATT
TTTTTTTCCAAACCACACCACCACCCCCCACCTCTCCCCAGAAACCCCCC
AAGGAAAGCCCCGCCTTTTCCTCCTTTTACAACCCCCCCGCCCACAGACC
CGGGAGGTTTTTCCCCCCCGCCCCCCCCCCCTAGCTTTATATTTTTCTTT
TCTCTTTACTGGCTCCCCCCCCCACCACCTAATATAACCCCCCCGCCCTC
CTTCCCCTGCCCCTCCCTCCTCCCTTCCCCCTCCACCCACCACCCCTCCC
CTCACTCTCATCTCCTGCTTTCAATCCCCCCCCCCCCCTCTCCCTCCCCC
CTCCCTCTCCCCACCCCCCTATCTTCTCGTCCCTCCTCCCATCCGACTAT
CCCTACATTCTTCACCAATCGCCCGCCTCCACACCACCTCCCCCCTTACC
ACCCTCCGCCCACCTTCTCCTCTCTCCCCGAGCCACCCCTACCCTTTTTT
TTTTTTTTCCCCCCCACACATACTCTCCTTTACC
GTGGGTAGCCTGGCGGCGCCTTTCAAAAAATGTAGGTGAACTATAGAATG
CCCGCGGAATTCAAATTTGGCTCAAGAGGATGAAGCCATTCCTGTGGTCC
CCCACATTTTTGGATAAGCATTTGAAACCTCTCTCTCAGTCCCTAAGGCT
CAAGAATATGACTTCTTTTAGCCTGGCTCTGGAAAGATATGTGTATTCCT
GCTTTCTTGATTTATTTTTAAAATTAATTAATTTACTCCTCTCCCCCCTC
TCTCCTCCTCTTCCTCCTTCTTCTTTTTCCCTTTCCCTTCCTCTCTACCC
CTTCTTGTATATATGTGTGTGTGTGTGTGTGCGCGAGCGTTTACTCTTTT
CTCTTCCCTTCACTACTCCTCTCTTCATTCTCCGCTTTTTATCTTCTCTC
CCCCCTTCGTTATTTATCTTTCCCCCCCTCCCTCATTTCCCTCTTATTTT
CTCAACACCGCTTCTTTCCTCCTTTTCCTCCTTTTTCTCTTCATTCCTTT
ACTCCCATCATCTCATTCTCTCTTTCTTCCTCCCCTTTACATTCCCCTAC
TTCTTTTCCTTTCATTCCTTCCTTTTCTTCTCTCCTTCTCTTCTTCTTTT
CCTTCTCCTCTACCCTCTAACTTAAACCCTCCAATAACCTTTTCACTTTT
CAATATTTTATTCCTCATTTTTCCCTCTTTTTTCCCATACTCTTTATCTT
TCCATCTACTTCAATTCAATTACCCAACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_l18.g1 MSMg01no126_l18.g1 CHROMAT_FILE:
MSMg01no126_l18.g1 PHD_FILE: MSMg01no126_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:14 2005
         (272 letters)



>mm_chr9_115003779_115004450
          Length = 672

 Score =  482 bits (249), Expect = e-140
 Identities = 267/273 (97%), Gaps = 1/273 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcaaatttggctcaagaggatgaagccattcctgtggtcccccacatttttggataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcaaatttggctcaagaggatgaagccattcctgtggtcccccacatttttggataa 260

                                                                       
Query: 61  gcatttgaaacctctctctcagtccctaaggctcaagaatatgacttcttttagcctggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatttgaaacctctctctcagtccctaaggctcaagaatatgacttcttttagcctggc 320

                                                                       
Query: 121 tctggaaagatatgtgtattcctgctttcttgatttatttttaaaattaattaatttact 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 tctggaaagatatgtgtattcctgttttcttgatttatttttaaaattaattaatttact 380

                                                                       
Query: 181 cctctcccccctctctcctcctcttcctccttcttctttttccctttcccttcctctcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctctcccccctctctcctcctcttcctccttcttctttttccctttcccttcctctcta 440

                                            
Query: 241 ccccttct-tgtatatatgtgtgtgtgtgtgtg 272
           |||||| | ||| | | ||||||||||||||||
Sbjct: 441 ccccttatgtgtgtgtgtgtgtgtgtgtgtgtg 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)