Query= MSMg01no126_o17.b1 MSMg01no126_o17.b1 CHROMAT_FILE:
MSMg01no126_o17.b1 PHD_FILE: MSMg01no126_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:29 2005
(220 letters)
>mm_chr9_41637549_41638167
Length = 619
Score = 360 bits (186), Expect = e-104
Identities = 210/218 (96%), Gaps = 1/218 (0%)
Strand = Plus / Plus
Query: 1 actgaccgtggcttcattcgaaccttggcaatattggtttggacactcttcttagatcgt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 actgaccgtggcttcattcgaaccttggcaatattggtttggacactcttcttagaccgt 260
Query: 61 gaaccttcaacttcttcttccctggtttgtgttccatcgccactcagattccttaatacc 120
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 261 gaaccttcaacttcttcttccctggtttgtgttccat-gtcactcagattccttaatacc 319
Query: 121 tggcttcagatcccttcctccctgcttctcctcttcccatccatcattcttgttctcttg 180
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 320 tgggttcagatcccttcctccctgcctctcctcttcccatccatcattcttgttctcttg 379
Query: 181 cctgtcttcctgtcttctttcttccgtctctttttttg 218
|||||||||||||||||||| ||| || ||||||||||
Sbjct: 380 cctgtcttcctgtcttcttttttctgtttctttttttg 417
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 619
Length adjustment: 9
Effective length of query: 211
Effective length of database: 610
Effective search space: 128710
Effective search space used: 128710
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no126_o17.g1 MSMg01no126_o17.g1 CHROMAT_FILE:
MSMg01no126_o17.g1 PHD_FILE: MSMg01no126_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:29 2005
(505 letters)
>mm_chr9_41763769_41764674
Length = 906
Score = 940 bits (486), Expect = 0.0
Identities = 501/506 (99%), Gaps = 1/506 (0%)
Strand = Plus / Minus
Query: 1 tctttagg-aatgttaaagggctggcggtacgatatggtggagcaggtgggatatggtga 59
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tctttaggaaatgttaaagggctggcggtacgatatggtggagcaggtgggatatggtga 647
Query: 60 gagttggcttctttcactttaacaaactttgactgagtactatccaggttttgaagttgc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gagttggcttctttcactttaacaaactttgactgagtactatccaggttttgaagttgc 587
Query: 120 gatagtaaaccaaaccctgacatcagcaagcagagcctcaggctgacaggacaagttaat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gatagtaaaccaaaccctgacatcagcaagcagagcctcaggctgacaggacaagttaat 527
Query: 180 aaacataactaatgagctaactatgtggattgaaacgttgcaggtatggagatgtgtact 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aaacataactaatgagctaactatgtggattgaaacgttgcaggtatggagatgtgtact 467
Query: 240 gtctgtccatagttacaaggagagccaggcactacccctctctcgaaagagagatttcag 299
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gtctgtccagagttacaaggagagccaggcactacccctctctcgaaagagagatttcag 407
Query: 300 aatactagacatctcaaagtaatatctgcttggtgaatcttccacagctaaaaggccgtc 359
|||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct: 406 aatactagacatctcaaagtaatatctgcttggtgaatcttctaaagttaaaaggccgtc 347
Query: 360 agcacaagagaagtcagagtggcgagtgggaatctggagtgtgcagatgcccagagaacg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agcacaagagaagtcagagtggcgagtgggaatctggagtgtgcagatgcccagagaacg 287
Query: 420 gagaaaagagtattccaattggttagtgaccagagcaagttcaattgcaaaagctgtgag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gagaaaagagtattccaattggttagtgaccagagcaagttcaattgcaaaagctgtgag 227
Query: 480 ctcagttttgtctcatggaggcatgc 505
||||||||||||||||||||||||||
Sbjct: 226 ctcagttttgtctcatggaggcatgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 906
Length adjustment: 10
Effective length of query: 495
Effective length of database: 896
Effective search space: 443520
Effective search space used: 443520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
