BAC Information

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BAC

Clone NameMSMg01-126P08
Chromosome9 (Build37)
Map Location 94,313,372 - 94,313,838
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674371, LOC384967, EG384968
Downstream gene1190002N15Rik, EG667601, Slc9a9, Chst2, LOC667088
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126P08.T7 (MSMg01no126_p08.b1)MSMg01-126P08.TJ (MSMg01no126_p08.g1)
ACCAG335633AG335634
length679755
length of high quality
(start - end)
469 (46 - 514)75 (74 - 148)
definitionCHROMAT_FILE: MSMg01no126_p08.b1 PHD_FILE: MSMg01no126_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:32 2005CHROMAT_FILE: MSMg01no126_p08.g1 PHD_FILE: MSMg01no126_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCATCTAAATTTGCGGCGCTATACGATCACTATTCTCGAGAGGATCCGCG
GAATTCCATACATGTCTTTTAATCATAGTCATTCCCCTACCACCCAACTT
CTTCAAGACTCACCACCACCTCCCTACCACCCAATTTCAGGCCTTTATAC
TATATAAATATATGTAGGTGCTACAACTTAAGGTATATTCACTTTCTGTA
TGCACACACATGCTCGAACACTCGCGCGCGCGCACACACACAGTGCTGTG
GGAAATATTATGTCTTCTCTCACCAATGTTGGAATCACAGGATGGAGTAC
AAGGACCTAGGTGCCATTATAAGTCCTGTAACATGCTCCATGTACGACCT
GACATGAGTTTTCCTCCTACTGGGATTTAGCTCATTGGCTGCGAAGATCT
AGAGAACCACACTGCTCCACAGGGTAAGAGCTAGATGACGCTTCTGTGCC
CAGTGTAAACAGAGGTTGCACAGTACTCGACAGCAAAAAGAGCTGTTATT
AATAGCTTTGGGATCACAGAGTGTGTTATCTTGAATCAGAGGTCCCTGTC
ATACACCCATATGAAAAAAGTTATTAACTCATTCATAGTCAAAGTTTGCA
AGTAAACTTCATAGCACTTGGAATACTGGGTGAAATGCGTAGCTGTAACT
CATGCTTATTTCCTTGATTTTGAGCAAAG
CATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTGTCAATGAATGAAAACAACTTAGA
AGGTGTGTGTGTGTATGTGTGTGTGTGTTTGTGTGTTTGTGTGTGTGCTC
CCAATACTTTCCTATTCTTCCCCCTTTTCTTCCTAATATTCTCTATCCCC
TTTCCACCTCACTAACACACATCCATTAAATCCTCCTCCTTTCTCCTTTC
TTCCTATTCTCCCACTACTTTCCTTTCTTTTTTTTACTCATTACATCCTA
CTTTATACCCCAAGCTTCCTTTCTTTTTTCTTTAACCATCCACAACTTTC
ACCTTTAAACTTTATCTACCCCTCTTCATAATTCAATTTTCAATAATTCA
TCATATCTTCCTAATTTATTTAATTTACCCCCCCACATATATTATTTTTT
TGAGAATATCTATAAAAAACTATTCTTCTTTCCCTACTACGATTCCTTTC
TTCATCAATCTAAACTATCACTCTAACTACATTATATCTTATATTCTTTA
CACTTAACCATCACTTATTTATATCATAACTATCATTTCCTTTCACTTAC
TATTTACTTTCTACTCCACTCTTCATACCTCCCCATCTTTCTATTCTTTA
ACTATATATATTCACCGCAACTCTTCAATATTGTTACATACTTTCTTCCC
CTTTTTTCCCAATAAACTAATAATACCCACCTACTTCGTCTCAATATCCT
AAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_p08.b1 MSMg01no126_p08.b1 CHROMAT_FILE:
MSMg01no126_p08.b1 PHD_FILE: MSMg01no126_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:32 2005
         (469 letters)



>mm_chr9_94313167_94314038
          Length = 872

 Score =  845 bits (437), Expect = 0.0
 Identities = 459/467 (98%), Gaps = 3/467 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccatac-atgtcttttaatcatagtcattcccctaccacccaacttcttcaagac 64
           ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccatacaatgtattttaatcatagtcattcccctaccacccaacttcttcaagac 265

                                                                       
Query: 65  tcaccaccacctccctaccacccaatttcaggcctttatactatataaatatatgtaggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcaccaccacctccctaccacccaatttcaggcctttatactatataaatatatgtaggt 325

                                                                       
Query: 125 gctacaacttaaggtatattcactttctgtatgcacacacatgctcgaacactcgcg--c 182
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 326 gctacaacttaaggtatattcactttctgtatgcacacacatgctcgaacactcgcgcac 385

                                                                       
Query: 183 gcgcgcacacacacagtgctgtgggaaatattatgtcttctctcaccaatgttggaatca 242
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gcgcacacacacacagtgctgtgggaaatattatgtcttctctcaccaatgttggaatca 445

                                                                       
Query: 243 caggatggagtacaaggacctaggtgccattataagtcctgtaacatgctccatgtacga 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 caggatggagtacaaggacctaggtgccattataagtcctgtaacatgctccatgtacga 505

                                                                       
Query: 303 cctgacatgagttttcctcctactgggatttagctcattggctgcgaagatctagagaac 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cctgacatgagttttcctcctactgggatttagctcattggctgcgaagatctagagaac 565

                                                                       
Query: 363 cacactgctccacagggtaagagctagatgacgcttctgtgcccagtgtaaacagaggtt 422
           |||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cacactgctttatagggtaagagctagatgacgcttctgtgcccagtgtaaacagaggtt 625

                                                          
Query: 423 gcacagtactcgacagcaaaaagagctgttattaatagctttgggat 469
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gcacagtactcgacagcaaaaagagctgttattaatagctttgggat 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 872
Length adjustment: 10
Effective length of query: 459
Effective length of database: 862
Effective search space:   395658
Effective search space used:   395658
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)