Query= MSMg01no127_a01.b1 MSMg01no127_a01.b1 CHROMAT_FILE:
MSMg01no127_a01.b1 PHD_FILE: MSMg01no127_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:36 2005
(578 letters)
>mm_chr9_29371170_29372148
Length = 979
Score = 1056 bits (546), Expect = 0.0
Identities = 567/574 (98%), Gaps = 1/574 (0%)
Strand = Plus / Minus
Query: 6 gaattcttttttgt-gcactctgcattagagaacactcctaagagtggttctcactgcag 64
|||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 779 gaattcttttttgtggaactctccattagagaacactcctaagagtggttctcactgcag 720
Query: 65 cctccaggaatgcattaaactgaaggtgaagataatttgcctcagcattcagtgtgactg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 cctccaggaatgcattaaactgaaggtgaagataatttgcctcagcattcagtgtgactg 660
Query: 125 caccactaatgatctgagagctattgtgggctacttccttcctggatgcctgtggttttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 caccactaatgatctgagagctattgtgggctacttccttcctggatgcctgtggttttt 600
Query: 185 aaagcacactcagatttcagatctgccgaggaccccagcctgttctaacatttccatgat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aaagcacactcagatttcagatctgccgaggaccccagcctgttctaacatttccatgat 540
Query: 245 ctctcctgagggaagaggggttgctttccttgcccttttcccgttctctcccttcctgca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ctctcctgagggaagaggggttgctttccttgcccttttcccgttctctcccttcctgca 480
Query: 305 atggatgcttaggggttagaggtgtacttctttcttggtggtttgttctcatggggtttg 364
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 479 atggatgcttaggggttagagatgtacttctttcttggtggtttgttctcatggggtttg 420
Query: 365 gaaataatcattttgagatgaatgcttgtgcagttgtcagagggtcctgccactgctgct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gaaataatcattttgagatgaatgcttgtgcagttgtcagagggtcctgccactgctgct 360
Query: 425 agcccgatgtacctttgctaccattccaatgtctctgaagtgtaactcagagcagcacac 484
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 359 agcccgatgtacctttgctaccatcccaatgtctctgaagtgtaactcagagcagcacac 300
Query: 485 ctccaggggtgtgctaccatggcagctagtttatcatttacaaatcctgttgagttgtgc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ctccaggggtgtgctaccatggcagctagtttatcatttacaaatcctgttgagttgtgc 240
Query: 545 cgtaaccaatatatgttattaccgctttgcatag 578
|||||| ||||||||||||||||| |||||||||
Sbjct: 239 cgtaacaaatatatgttattaccgttttgcatag 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 979
Length adjustment: 10
Effective length of query: 568
Effective length of database: 969
Effective search space: 550392
Effective search space used: 550392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no127_a01.g1 MSMg01no127_a01.g1 CHROMAT_FILE:
MSMg01no127_a01.g1 PHD_FILE: MSMg01no127_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:36 2005
(561 letters)
>mm_chr9_29211899_29212859
Length = 961
Score = 613 bits (317), Expect = e-179
Identities = 320/321 (99%), Gaps = 1/321 (0%)
Strand = Plus / Plus
Query: 1 agtaaatctatccaagtgacatttgaatatttgatatcaagtgatatgaatatttgagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaaatctatccaagtgacatttgaatatttgatatcaagtgatatgaatatttgagct 260
Query: 61 acaacagtttacaatgcgaaagggatgcaaaagtgttggtattatatacatctacatgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaacagtttacaatgcgaaagggatgcaaaagtgttggtattatatacatctacatgtg 320
Query: 121 catatacataagtttatatatgtcgatatagtcatataaaataccattatgcataaagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catatacataagtttatatatgtcgatatagtcatataaaataccattatgcataaagtc 380
Query: 181 atttgcactactttagtttcacccaacacatcatgggataggtagcaactgttctcttca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttgcactactttagtttcacccaacacatcatgggataggtagcaactgttctcttca 440
Query: 241 aacaaagagactaatgtttttttgtctgaaaacacactgaaaagatgcctacatcacact 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaaagagactaatgtttttt-gtctgaaaacacactgaaaagatgcctacatcacact 499
Query: 301 gaaaagatgcctacatcacac 321
|||||||||||||||||||||
Sbjct: 500 gaaaagatgcctacatcacac 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
