BAC Information

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BAC

Clone NameMSMg01-127G12
Chromosome9 (Build37)
Map Location 93,327,646 - 93,327,863
singlet/doubletsinglet
Overlap geneLOC674371
Upstream genePlscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114
Downstream geneLOC384967, EG384968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127G12.T7 (MSMg01no127_g12.b1)MSMg01-127G12.TJ (MSMg01no127_g12.g1)
ACCAG335958AG335959
length704718
length of high quality
(start - end)
---218 (73 - 290)
definitionCHROMAT_FILE: MSMg01no127_g12.b1 PHD_FILE: MSMg01no127_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:08 2005CHROMAT_FILE: MSMg01no127_g12.g1 PHD_FILE: MSMg01no127_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGGCCGGAAAGGAATCACTTTCGAACCCCGACCGNGGAANNAN
NNATTACCCCACCGNGGGAAGNNNNNNCCGNNCAANGACNCGGNANNNAA
ANGAGAATATAGACCGGNGGNAGGGNCANANNAGNAGGACGNACAGNAAA
NCCNGCCACCCAGAGGAGGAAGANGCNCGAGAAGGGGGCGAAACACCGGC
ACAANCACAGCCCAAANCAANCCNACCACGGCGGNAAGGCCTTTTTTTTT
CACATTCATTTCCTTTCCTAACTGTATAACCATAGCTTACTACTCCACAA
GGGCCTTTTTCCTCTTTATNAAAGAACCGGACGAGCGCAACACGAAGTTT
TTTTTCTCCCCCCCCGCCCGCTTTCCTATCTTGAAATTTCTTCCCAAGCA
AATCACCCAATAGAAAAATAAACGTTCTTGGGAATATGGACAGAATGCAG
TCACATTTTTTGCCAGATGCCCTACAAAAATTACTAGTCCAGTCTCTAGA
TAGTCATGTCCTCTTTGAACATTTCTCCTACTGGATCCTTAATCTCTGCA
TTTCCTTCTGCATACTGGTTTTACTAGCTTCCACCAGTATGTTATTTCTT
ATTCCCCTTACACCCTGTTACGACCTTTCTAGCTCAAAGTTTTTTTTTCT
TTTTGNTCCCCAAATCGAAAAACACCTAAATTTATAATGCTTTCTATCAG
TTTT
AATGACAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAGCTCATTTAGTGCCTCCGAATTCTA
AATTAACTTTTACTTTCTAATACCAAGGCATATTATTAAAATAATTTCAG
GACTTGACATTGGTGTATAAATGTGCACTAGTTCTTTCACGTAATCTAAA
TAATAAAAGCAAATCAATTCATTCTTCAGTTGCTTTATGACATACAAATT
ACCAAGGTAGGTTATTTCACAGAAATATTAAAAAATAAGCATAGCGTAAT
TTTTAACTTTCAAAAATATTATGTTTTTATTGAGTTGGAAAATGAGGCGA
GAAATTCATTTATGGAGTCCTCCTTTGCAGCTAGGCTGCTTTGTATAATG
AATAAGAGGTATTCCCCCCCCACCTGCTAGCAAAGAATCAATGTGGCAAA
AACATACAATTTACTTCGATTACAGCATAGGTCGTCTTGGTACATCAGCT
TCTGGTCACATACGATCAATATTGTGTGACCTAATTCCTAGGCAACTATA
TATGTTTCTGCTTTCTCTCCCTCTGTTCTGTTCCACCAACTTTCCATTAC
TGCTTTATCACACATCCTATCTCGTCACCTCATTTTTATCGTTCACTTTT
CCGTCCCTTTATGATTCCCATAATTTTATTTATCCGACCCATGCTTTTGT
TGTACATCTCCACTCAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_g12.g1 MSMg01no127_g12.g1 CHROMAT_FILE:
MSMg01no127_g12.g1 PHD_FILE: MSMg01no127_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:08 2005
         (218 letters)



>mm_chr9_93327446_93328063
          Length = 618

 Score =  398 bits (206), Expect = e-115
 Identities = 215/218 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagctcatttagtgcctccgaattctaaattaacttttactttctaataccaaggcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aaagctcatttagtgcctccgaattctaaattaacttttactttctaataccaaggcata 359

                                                                       
Query: 61  ttattaaaataatttcaggacttgacattggtgtataaatgtgcactagttctttcacgt 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 358 ttattaaaataatttcaggacttgacattggtgtataaatgtgtactagttctttcacgt 299

                                                                       
Query: 121 aatctaaataataaaagcaaatcaattcattcttcagttgctttatgacatacaaattac 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 298 aatctaaataataaaagcaaatcaattcattcttcagttgctttaggacatacaaattac 239

                                                 
Query: 181 caaggtaggttatttcacagaaatattaaaaaataagc 218
           ||||||||||||||||| ||||||||||||||||||||
Sbjct: 238 caaggtaggttatttcaaagaaatattaaaaaataagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)