BAC Information

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BAC

Clone NameMSMg01-127O22
Chromosome9 (Build37)
Map Location 124,039,917 - 124,040,204
singlet/doubletsinglet
Overlap geneCcr5
Upstream geneExosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1, Ccr3, Ccr2
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127O22.T7 (MSMg01no127_o22.b1)MSMg01-127O22.TJ (MSMg01no127_o22.g1)
ACCAG336337AG336338
length720712
length of high quality
(start - end)
289 (65 - 353)425 (75 - 499)
definitionCHROMAT_FILE: MSMg01no127_o22.b1 PHD_FILE: MSMg01no127_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:51 2005CHROMAT_FILE: MSMg01no127_o22.g1 PHD_FILE: MSMg01no127_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:40:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCGCTAATACGACTCCTATATCCAGAAATCCGCGGAATTCTTTGGA
CTGTCCAAATGCAGAGTTCTAATAGACTAGACCAGGCCATGCAGGCAACA
GAGACTCTTGGAATGACACACTGCTGCCTAAACCCTGTCATCTATGCCTT
TGTTGGAGAGAAGTTCCGGAGTTATCTCTCAGTGTTCTTCCGAAAACACA
TTGTCAAACGCTTTTGCAAACGGTGTTCAATTTTCCAGCAAGACAATCCT
GATCGTGTAAGCTCAGTCTATACCCGATCCACAGGAGAACATGAAGTTTC
TACTGGTTTATGATCTGGTTGACTTTTGTGTATCACGTACTTTTTCTATG
CATTTTGTGAGCCCCACGCCTCTTTTAAAAAAGAAATTAGTATCATAGAG
GGCCCCCCATACATGCATCTTTTTGATATTTATTTTTAGATAGATTGGAT
CTTTTATAACTGAATGGGGAGGTTGGGGTGGCGGATCCATCCCTTTTCCT
TCTCTTCTTTATTCCCTTCTTCCTCTTCCTTCATCTTTACTTTCCCCCTC
CAATTTCCCTCCTCTCTTTTACCCTCATTTTTTTTCCCTTAATCCATTTT
TTTCATTTCTTTTTTCCCCCTTCTCCCTTTACTACACTCTTTTTTTTTCC
CTTTTTTCCCACTTCCTTTTATTCTCTCTCCTTCTTCCCCGTGCCTTCCT
CCTTCTTTCCTTCCTCTTTT
CTCGATGTAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCACCTCTATCTAGCTAAGGATCTAT
TGGCAACCAATACCACCCAAGAGAGTGGAATTTCTTTAAAGGTGTGGCCA
CTTGTAAGGAGGAAGGACAAACATCCAAGAGTATGGGGAAACAGCAGAAA
TAGTACTTAAGGCTATTCAAAAACTGGACACAGATTAGTGTCAAAGTGTT
GCGTGATCTCAGTCCTAGAGAGACATGAACTAGTTCTATTCACCCCATAT
AGGGACCAATGACTCAACAAAGAATGTATCACCTGAGTCCAACATGGGTG
AGCCAGCGAGTTTTATTGGGGTTACTTAGAGAAACAGAAATGTTGCAAAG
CCTGTTACATCTCAAAGCCCACCCCAGCATGGGTGAGAGCTCATATCCCA
AAGCTAGGAACCTGGATTGCATTGCCCAGTCTGTAGGCAGCTCTACAGGT
TGGAGTGCCCTTTCCAAACAGCCAGCTGGTCTCTGTTTCTTCTAGGTAGT
TCTGCTGGCGTTTACCTCCAAGCTGCTGGCATGCTTTCTGAAGGTTGTGG
GTTGCCAGACCGGGTCTGTATTCTGCATAGTCTTTACTGCTACTCCTCAG
TGTCGTCTGGCGCATCTAATGTATCTGGCACCTTCTGGAGCTATTTCGAG
TGAGTTACTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_o22.b1 MSMg01no127_o22.b1 CHROMAT_FILE:
MSMg01no127_o22.b1 PHD_FILE: MSMg01no127_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:51 2005
         (289 letters)



>mm_chr9_124039717_124040405
          Length = 689

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttctaatagactagaccaggccatgcaggcaacagagactcttggaatgacacactgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttctaatagactagaccaggccatgcaggcaacagagactcttggaatgacacactgc 260

                                                                       
Query: 61  tgcctaaaccctgtcatctatgcctttgttggagagaagttccggagttatctctcagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcctaaaccctgtcatctatgcctttgttggagagaagttccggagttatctctcagtg 320

                                                                       
Query: 121 ttcttccgaaaacacattgtcaaacgcttttgcaaacggtgttcaattttccagcaagac 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttccgaaaacacatggtcaaacgcttttgcaaacggtgttcaattttccagcaagac 380

                                                                       
Query: 181 aatcctgatcgtgtaagctcagtctatacccgatccacaggagaacatgaagtttctact 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcctgatcgtgcaagctcagtctatacccgatccacaggagaacatgaagtttctact 440

                                                           
Query: 241 ggtttatgatctggttgacttttgtgtatcacgtactttttctatgca 288
           ||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 ggtttatgacctggttgacttttgtgtatcacgtagtttttctatgca 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)